RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 SH2D7A6NKC9 451 aaPredicted RBP11.82□□□□□ -0.52
LIMS4-201ENST00000413601 CCRL2O00421 344 aa11.82□□□□□ -0.52
LIMS4-201ENST00000413601 PEX14O75381 377 aa11.82□□□□□ -0.52
LIMS4-201ENST00000413601 TSPAN15O95858 294 aa11.82□□□□□ -0.52
LIMS4-201ENST00000413601 GAPDHP04406 335 aaKnown RBP11.82□□□□□ -0.52
LIMS4-201ENST00000413601 AMY1AP04745 511 aa11.82□□□□□ -0.52
LIMS4-201ENST00000413601 AMY2AP04746 511 aa11.82□□□□□ -0.52
LIMS4-201ENST00000413601 PSMB9P28065 219 aa11.82□□□□□ -0.52
LIMS4-201ENST00000413601 VDAC2P45880 294 aaPredicted RBP11.82□□□□□ -0.52
LIMS4-201ENST00000413601 PSMD7P51665 324 aa11.82□□□□□ -0.52
LIMS4-201ENST00000413601 OR10A3P58181 314 aa11.82□□□□□ -0.52
LIMS4-201ENST00000413601 ZNF816Q0VGE8 651 aaPredicted RBP11.82□□□□□ -0.52
LIMS4-201ENST00000413601 HES1Q14469 280 aa11.82□□□□□ -0.52
LIMS4-201ENST00000413601 HNF4GQ14541 408 aa11.82□□□□□ -0.52
LIMS4-201ENST00000413601 Q3ZCU0 254 aa11.82□□□□□ -0.52
LIMS4-201ENST00000413601 SLC25A48Q6ZT89 311 aaKnown RBP11.82□□□□□ -0.52
LIMS4-201ENST00000413601 MOB3BQ86TA1 216 aa11.82□□□□□ -0.52
LIMS4-201ENST00000413601 FAM89BQ8N5H3 189 aa11.82□□□□□ -0.52
LIMS4-201ENST00000413601 URM1Q9BTM9 101 aaKnown RBP11.82□□□□□ -0.52
LIMS4-201ENST00000413601 OR2S2Q9NQN1 319 aa11.82□□□□□ -0.52
LIMS4-201ENST00000413601 BOLA1Q9Y3E2 137 aa11.82□□□□□ -0.52
LIMS4-201ENST00000413601 IGHV3-72A0A0B4J1Y9 119 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 IGHV1-3A0A0C4DH29 117 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 PDCD5O14737 125 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 IGKV1D-33P01593 117 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 IGKV1-33P01594 117 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 TMEM11P17152 192 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 MYL9P24844 172 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 VEGFCP49767 419 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 GNMTQ14749 295 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 TMEM30BQ3MIR4 351 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 MORN2Q502X0 79 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 CT45A1Q5HYN5 189 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 C22orf42Q6IC83 251 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 Q6ZPA2 131 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 ZNF554Q86TJ5 538 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 OR52L2PQ8NGH6 319 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 CT45A3Q8NHU0 189 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 SETD6Q8TBK2 473 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 FCGR1BQ92637 280 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 ST6GALNAC6Q969X2 333 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 WNT10AQ9GZT5 417 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 CHMP1AQ9HD42 196 aaPredicted RBP11.81□□□□□ -0.52
LIMS4-201ENST00000413601 STEAP1Q9UHE8 339 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 WNK1Q9H4A3 2382 aa11.81□□□□□ -0.52
LIMS4-201ENST00000413601 TRRAPQ9Y4A5 3859 aa11.8□□□□□ -0.52
LIMS4-201ENST00000413601 TMEM272A0A1B0GTI8 110 aa11.8□□□□□ -0.52
LIMS4-201ENST00000413601 FBXO24O75426 580 aa11.8□□□□□ -0.52
LIMS4-201ENST00000413601 NAPSAO96009 420 aa11.8□□□□□ -0.52
LIMS4-201ENST00000413601 LPLP06858 475 aa11.8□□□□□ -0.52
LIMS4-201ENST00000413601 CD28P10747 220 aa11.8□□□□□ -0.52
LIMS4-201ENST00000413601 GALP22466 123 aa11.8□□□□□ -0.52
LIMS4-201ENST00000413601 IL3RAP26951 378 aa11.8□□□□□ -0.52
LIMS4-201ENST00000413601 PPP1CCP36873 323 aaKnown RBP11.8□□□□□ -0.52
LIMS4-201ENST00000413601 TMEM50BP56557 158 aa11.8□□□□□ -0.52
LIMS4-201ENST00000413601 PLA2G7Q13093 441 aa11.8□□□□□ -0.52
LIMS4-201ENST00000413601 C2orf68Q2NKX9 166 aa11.8□□□□□ -0.52
LIMS4-201ENST00000413601 C9orf152Q5JTZ5 239 aa11.8□□□□□ -0.52
LIMS4-201ENST00000413601 ZNF773Q6PK81 442 aa11.8□□□□□ -0.52
LIMS4-201ENST00000413601 LYG1Q8N1E2 194 aa11.8□□□□□ -0.52
LIMS4-201ENST00000413601 WIPF2Q8TF74 440 aaPredicted RBP11.8□□□□□ -0.52
LIMS4-201ENST00000413601 RTN4IP1Q8WWV3 396 aaPredicted RBP11.8□□□□□ -0.52
LIMS4-201ENST00000413601 HDHD3Q9BSH5 251 aaPredicted RBP11.8□□□□□ -0.52
LIMS4-201ENST00000413601 MMP27Q9H306 513 aa11.8□□□□□ -0.52
LIMS4-201ENST00000413601 AK3Q9UIJ7 227 aa11.8□□□□□ -0.52
LIMS4-201ENST00000413601 MOB4Q9Y3A3 225 aa11.8□□□□□ -0.52
LIMS4-201ENST00000413601 SMIM30A4D0T7 59 aa11.79□□□□□ -0.52
LIMS4-201ENST00000413601 IFITM5A6NNB3 132 aa11.79□□□□□ -0.52
LIMS4-201ENST00000413601 FOXI3A8MTJ6 420 aaPredicted RBP11.79□□□□□ -0.52
LIMS4-201ENST00000413601 M0QZK8 103 aa11.79□□□□□ -0.52
LIMS4-201ENST00000413601 LDLRAD4O15165 306 aa11.79□□□□□ -0.52
LIMS4-201ENST00000413601 CSF1P09603 554 aa11.79□□□□□ -0.52
LIMS4-201ENST00000413601 RAB3BP20337 219 aa11.79□□□□□ -0.52
LIMS4-201ENST00000413601 HTD2P86397 168 aa11.79□□□□□ -0.52
LIMS4-201ENST00000413601 HMGN3Q15651 99 aa11.79□□□□□ -0.52
LIMS4-201ENST00000413601 ZNF880Q6PDB4 577 aa11.79□□□□□ -0.52
LIMS4-201ENST00000413601 FAM110DQ8TAY7 271 aaPredicted RBP11.79□□□□□ -0.52
LIMS4-201ENST00000413601 IL1F10Q8WWZ1 152 aa11.79□□□□□ -0.52
LIMS4-201ENST00000413601 GALMQ96C23 342 aa11.79□□□□□ -0.52
LIMS4-201ENST00000413601 ARHGAP5-AS1Q96IT6 56 aa11.79□□□□□ -0.52
LIMS4-201ENST00000413601 PECRQ9BY49 303 aa11.79□□□□□ -0.52
LIMS4-201ENST00000413601 TXNL4BQ9NX01 149 aaKnown RBP11.79□□□□□ -0.52
LIMS4-201ENST00000413601 ABRACLQ9P1F3 81 aa11.79□□□□□ -0.52
LIMS4-201ENST00000413601 JPT1Q9UK76 154 aa11.79□□□□□ -0.52
LIMS4-201ENST00000413601 RAB22AQ9UL26 194 aa11.79□□□□□ -0.52
LIMS4-201ENST00000413601 HSF4Q9ULV5 492 aa11.79□□□□□ -0.52
LIMS4-201ENST00000413601 A0A0B4J203 849 aa11.78□□□□□ -0.52
LIMS4-201ENST00000413601 RANBP1P43487 201 aa11.78□□□□□ -0.52
LIMS4-201ENST00000413601 ZNF137PP52743 207 aa11.78□□□□□ -0.52
LIMS4-201ENST00000413601 PLAC9Q5JTB6 97 aa11.78□□□□□ -0.52
LIMS4-201ENST00000413601 STEAP3Q658P3 488 aa11.78□□□□□ -0.52
LIMS4-201ENST00000413601 NR2C2APQ86WQ0 139 aa11.78□□□□□ -0.52
LIMS4-201ENST00000413601 TGIF2LXQ8IUE1 241 aa11.78□□□□□ -0.52
LIMS4-201ENST00000413601 OR56B1Q8NGI3 324 aa11.78□□□□□ -0.52
LIMS4-201ENST00000413601 RBMXL1Q96E39 390 aaKnown RBP11.78□□□□□ -0.52
LIMS4-201ENST00000413601 EAF1Q96JC9 268 aaPredicted RBP11.78□□□□□ -0.52
LIMS4-201ENST00000413601 ABHD14AQ9BUJ0 271 aa11.78□□□□□ -0.52
LIMS4-201ENST00000413601 RIMS4Q9H426 269 aaPredicted RBP11.78□□□□□ -0.52
LIMS4-201ENST00000413601 STUB1Q9UNE7 303 aa11.78□□□□□ -0.52
LIMS4-201ENST00000413601 MGAM2Q2M2H8 2515 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms