RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 NGFP01138 241 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 CLDN2P57739 230 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 HBBP68871 147 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 C8orf82Q6P1X6 216 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-206ENST00000409809 SYT8Q8NBV8 401 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 OR11G2Q8NGC1 345 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 CHST5Q9GZS9 411 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 RALGAPA2Q2PPJ7 1873 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 DHHO43323 396 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 MPZL1O95297 269 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 IFITM2Q01629 132 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 TMEM222Q9H0R3 208 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 PLSCR2Q9NRY7 297 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 ICOSLGO75144 302 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 CD1BP29016 333 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 MUC15Q8N387 334 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 C17orf47Q8NEP4 570 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 PRDM13Q9H4Q3 707 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 PDFQ9HBH1 243 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 RABAC1Q9UI14 185 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 ZNF502Q8TBZ5 544 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 NPDC1Q9NQX5 325 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-206ENST00000409809 FLRT3Q9NZU0 649 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 A0A1W2PQM1 296 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 ASPDHA6ND91 283 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 GPR27Q9NS67 375 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 GTF3C1Q12789 2109 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 PTGER1P34995 402 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 NKG7Q16617 165 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 ZNF260Q3ZCT1 412 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 RTN4RL1Q86UN2 441 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-206ENST00000409809 ABCA7Q8IZY2 2146 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 FAM90A10PA6NDY2 464 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 FAM90A18PA6NE21 464 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 FAM90A16PA6NEW6 464 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 FAM90A20PA6NIJ5 464 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 FAM90A8PA6NJQ4 464 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 FAM90A7PA6NKC0 464 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 FAM90A22PA8MWA6 464 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 FAM90A12PA8MX19 464 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 FAM90A5PA8MXJ8 464 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 FAM90A23PA8MXZ1 464 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 FAM90A15PP0C7V4 464 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 FAM90A13PP0C7W8 464 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 FAM90A14PP0C7W9 464 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 FAM90A24PP0C7X0 464 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 CNOT1A5YKK6 2376 aaKnown RBP11.35□□□□□ -0.59
COL6A3-206ENST00000409809 MARF1Q9Y4F3 1742 aaKnown RBP11.35□□□□□ -0.59
COL6A3-206ENST00000409809 ZNF519Q8TB69 540 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 VSIG4Q9Y279 399 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 RAXQ9Y2V3 346 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 KLF13Q9Y2Y9 288 aaPredicted RBP11.35□□□□□ -0.59
COL6A3-206ENST00000409809 NHSL1Q5SYE7 1610 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 FBXO46Q6PJ61 603 aaPredicted RBP11.35□□□□□ -0.59
COL6A3-206ENST00000409809 MRPL32Q9BYC8 188 aaKnown RBP11.35□□□□□ -0.59
COL6A3-206ENST00000409809 K7ESF4 209 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 NKX2-2O95096 273 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 COL16A1Q07092 1604 aaPredicted RBP11.35□□□□□ -0.59
COL6A3-206ENST00000409809 LYZL6O75951 148 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 PRICKLE4Q2TBC4 344 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 ASCL5Q7RTU5 278 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 DEFB119Q8N690 84 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 ODAMA1E959 279 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 TMEM50AO95807 157 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 CKS1BP61024 79 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 SPSB4Q96A44 273 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 MISP3Q96FF7 219 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 ZNF257Q9Y2Q1 563 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 KIRREL2Q6UWL6 708 aa11.35□□□□□ -0.59
COL6A3-206ENST00000409809 LDLRAD1Q5T700 205 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 TTC9CQ8N5M4 171 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 OR6X1Q8NH79 312 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 ARSAP15289 507 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 C1orf61Q13536 156 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 FGF13Q92913 245 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 TRAV39A0A0B4J263 110 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 HOXA4Q00056 320 aaPredicted RBP11.34□□□□□ -0.59
COL6A3-206ENST00000409809 PAXXQ9BUH6 204 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 OR51B2Q9Y5P1 312 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 TIMM23BQ5SRD1 257 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 EMC6Q9BV81 110 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 OR3A4PP47883 348 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 SNAI3Q3KNW1 292 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 HIST1H1AQ02539 215 aaPredicted RBP11.34□□□□□ -0.59
COL6A3-206ENST00000409809 TMEM30BQ3MIR4 351 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 MAS1LP35410 378 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 STARD6P59095 220 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 TMEM249Q2WGJ8 235 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 DNM1P46Q6ZS02 220 aa11.34□□□□□ -0.59
COL6A3-206ENST00000409809 NRG2O14511 850 aaPredicted RBP11.33□□□□□ -0.6
COL6A3-206ENST00000409809 FCGR3BO75015 233 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 NUTF2P61970 127 aaKnown RBP11.33□□□□□ -0.6
COL6A3-206ENST00000409809 EFNB1P98172 346 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 SPACA9Q96E40 222 aaPredicted RBP11.33□□□□□ -0.6
COL6A3-206ENST00000409809 DNAJB12Q9NXW2 375 aaKnown RBP11.33□□□□□ -0.6
COL6A3-206ENST00000409809 SRIP30626 198 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 CCL14Q16627 93 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 TUSC5Q8IXB3 177 aa11.33□□□□□ -0.6
COL6A3-206ENST00000409809 LAMTOR5O43504 91 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms