RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 PPIAL4AQ9Y536 164 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 LOC102725191A0A1B0GVB3 256 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 GAGE10A6NGK3 116 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 SIRPB1O00241 398 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 CD33P20138 364 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 FOLR3P41439 243 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 COMPP49747 757 aaPredicted RBP10.36□□□□□ -0.75
HMGB1-206ENST00000405805 PPP1CBP62140 327 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 RPS23P62266 143 aaKnown RBP10.36□□□□□ -0.75
HMGB1-206ENST00000405805 VAX1Q5SQQ9 334 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 SMIM12Q96EX1 92 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 DIRC2Q96SL1 478 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 CTDSP1Q9GZU7 261 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 PARP11Q9NR21 331 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 CHST1O43916 411 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 GRPP07492 148 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 CCL4P13236 92 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 CEACAM1P13688 526 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 DYNLT3P51808 116 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 MMDQ15546 238 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 TMEM241Q24JQ0 296 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 SPATA45Q537H7 98 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 OR1K1Q8NGR3 316 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 OR1F12Q8NHA8 337 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 NINJ1Q92982 152 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 HIST1H2BLQ99880 126 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 HDGFL3Q9Y3E1 203 aa10.36□□□□□ -0.75
HMGB1-206ENST00000405805 C3orf85A0A1B0GTC6 90 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 MAP1LC3B2A6NCE7 125 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 FGF5P12034 268 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 UQCRFS1P47985 274 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 DUSP3P51452 185 aaPredicted RBP10.35□□□□□ -0.75
HMGB1-206ENST00000405805 NAAAQ02083 359 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 BSXQ3C1V8 233 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 FAM166AQ6J272 317 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 ZNF573Q86YE8 665 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 ZNF501Q96CX3 271 aaPredicted RBP10.35□□□□□ -0.75
HMGB1-206ENST00000405805 SLC35E1Q96K37 410 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 MAP1LC3BQ9GZQ8 125 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 MEGF9Q9H1U4 602 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 CCL28Q9NRJ3 127 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 ERRFI1Q9UJM3 462 aaPredicted RBP10.35□□□□□ -0.75
HMGB1-206ENST00000405805 DOCK11Q5JSL3 2073 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 GRIFINA4D1Z8 144 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 ZNF732B4DXR9 585 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 FCN1O00602 326 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 EFNA2O43921 213 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 IL2RAP01589 272 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 CTSDP07339 412 aaPredicted RBP10.35□□□□□ -0.75
HMGB1-206ENST00000405805 FAM3BP58499 235 aaPredicted RBP10.35□□□□□ -0.75
HMGB1-206ENST00000405805 STARD6P59095 220 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 SUPT4H1P63272 117 aaKnown RBP10.35□□□□□ -0.75
HMGB1-206ENST00000405805 GAPTQ8N292 157 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 POC1AQ8NBT0 407 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 Q8WTZ3 238 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 ZCCHC14Q8WYQ9 949 aaKnown RBP10.35□□□□□ -0.75
HMGB1-206ENST00000405805 PTX4Q96A99 478 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 FOXB1Q99853 325 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 SLC7A10Q9NS82 523 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 CACFD1Q9UGQ2 172 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 KIF26AQ9ULI4 1882 aaPredicted RBP10.35□□□□□ -0.75
HMGB1-206ENST00000405805 CA11O75493 328 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 IGHV3-13P01766 116 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 IGHV3-7P01780 117 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 AGAP20933 346 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 FUT3P21217 361 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 CLDN15P56746 228 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 EWSR1Q01844 656 aaKnown RBP eCLIP10.35□□□□□ -0.75
HMGB1-206ENST00000405805 SMAGPQ0VAQ4 97 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 CADM4Q8NFZ8 388 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 AQP10Q96PS8 301 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 GINS3Q9BRX5 216 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 NAT8BQ9UHF3 227 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 MED13LQ71F56 2210 aa10.35□□□□□ -0.75
HMGB1-206ENST00000405805 OR4A8P0C604 315 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 LINC00614P0C842 121 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 Q56UQ5 140 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 RHBDD2Q6NTF9 364 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 BTNL8Q6UX41 500 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 TBC1D26Q86UD7 250 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 CXorf67Q86X51 503 aaPredicted RBP10.34□□□□□ -0.75
HMGB1-206ENST00000405805 D2HGDHQ8N465 521 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 Q8NFD4 153 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 ABHD3Q8WU67 409 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 DUSP23Q9BVJ7 150 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 WIPF3A6NGB9 483 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 ANKRD30BLA7E2S9 258 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 NPIPB7O75200 414 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 RIPPLY2Q5TAB7 128 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 LIAT1Q6ZQX7 453 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 ZNF107Q9UII5 783 aaPredicted RBP10.34□□□□□ -0.75
HMGB1-206ENST00000405805 KLF2Q9Y5W3 355 aaPredicted RBP10.34□□□□□ -0.75
HMGB1-206ENST00000405805 A0A1W2PR77 199 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 GJE1A6NN92 205 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 PATE3B3GLJ2 98 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 DEDDO75618 318 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 KRASP01116 189 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 CLPSP04118 112 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 CD99P14209 185 aa10.34□□□□□ -0.75
HMGB1-206ENST00000405805 CNN1P51911 297 aaKnown RBP10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms