RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 TRGC1P0CF51 173 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 HIST3H2BBQ8N257 126 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 ZNF525Q8N782 197 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 RNASE11Q8TAA1 199 aaKnown RBP10.79□□□□□ -0.68
SHMT1-205ENST00000395684 SCGB1C1Q8TD33 95 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 CA5BP1Q8WTZ4 195 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 MBD3L1Q8WWY6 194 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 TREM2Q9NZC2 230 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 PCSK5Q92824 1860 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 S100GP29377 79 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 PLA2G5P39877 138 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 LHX2P50458 406 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 OR2T2Q6IF00 324 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 FAM58AQ8N1B3 248 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 OR10V1Q8NGI7 309 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 OR13D1Q8NGV5 346 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 RCC1LQ96I51 464 aaKnown RBP10.79□□□□□ -0.68
SHMT1-205ENST00000395684 SSX3Q99909 188 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 CABLES2Q9BTV7 478 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 PLK3Q9H4B4 646 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 PSENENQ9NZ42 101 aa10.79□□□□□ -0.68
SHMT1-205ENST00000395684 TNRC6AQ8NDV7 1962 aaKnown RBP10.78□□□□□ -0.68
SHMT1-205ENST00000395684 COX5BP10606 129 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 RND2P52198 227 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 TESK1Q15569 626 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 PRR18Q8N4B5 295 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 MAFAQ8NHW3 353 aaPredicted RBP10.78□□□□□ -0.68
SHMT1-205ENST00000395684 LRFN1Q9P244 771 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 PPP1R3CQ9UQK1 317 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.78□□□□□ -0.68
SHMT1-205ENST00000395684 PHOX2AO14813 284 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 PPP1R2P9O14990 202 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 IGHEP01854 428 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 CLDN18P56856 261 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 NKX6-1P78426 367 aaPredicted RBP10.78□□□□□ -0.68
SHMT1-205ENST00000395684 ZNF585BQ52M93 769 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 C4orf17Q53FE4 359 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 TIPARPQ7Z3E1 657 aaKnown RBP10.78□□□□□ -0.68
SHMT1-205ENST00000395684 LINC00596Q86U02 117 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 UBALD1Q8TB05 177 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 LSM10Q969L4 123 aaKnown RBP10.78□□□□□ -0.68
SHMT1-205ENST00000395684 TTC28Q96AY4 2481 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 PFDN5Q99471 154 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 OR51B6Q9H340 312 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 PRDM13Q9H4Q3 707 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 SDF2L1Q9HCN8 221 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 TMEM242Q9NWH2 141 aa10.78□□□□□ -0.68
SHMT1-205ENST00000395684 TNRC6BQ9UPQ9 1833 aaKnown RBP10.78□□□□□ -0.68
SHMT1-205ENST00000395684 CLDN34H7C241 214 aa10.77□□□□□ -0.69
SHMT1-205ENST00000395684 CYB5R3P00387 301 aaPredicted RBP10.77□□□□□ -0.69
SHMT1-205ENST00000395684 PNRC1Q12796 327 aaPredicted RBP10.77□□□□□ -0.69
SHMT1-205ENST00000395684 LRRC75BQ2VPJ9 315 aa10.77□□□□□ -0.69
SHMT1-205ENST00000395684 MYPOPQ86VE0 399 aaPredicted RBP10.77□□□□□ -0.69
SHMT1-205ENST00000395684 OR1K1Q8NGR3 316 aa10.77□□□□□ -0.69
SHMT1-205ENST00000395684 PSMG3Q9BT73 122 aaPredicted RBP10.77□□□□□ -0.69
SHMT1-205ENST00000395684 HES7Q9BYE0 225 aa10.77□□□□□ -0.69
SHMT1-205ENST00000395684 R4GN57 208 aa10.77□□□□□ -0.69
SHMT1-205ENST00000395684 NCOR1O75376 2440 aa10.77□□□□□ -0.69
SHMT1-205ENST00000395684 BDP1A6H8Y1 2624 aa10.77□□□□□ -0.69
SHMT1-205ENST00000395684 GATCO43716 136 aaKnown RBP10.77□□□□□ -0.69
SHMT1-205ENST00000395684 SERPINA7P05543 415 aa10.77□□□□□ -0.69
SHMT1-205ENST00000395684 WNT2P09544 360 aa10.77□□□□□ -0.69
SHMT1-205ENST00000395684 WNT5AP41221 380 aa10.77□□□□□ -0.69
SHMT1-205ENST00000395684 ZNF573Q86YE8 665 aa10.77□□□□□ -0.69
SHMT1-205ENST00000395684 C1orf87Q8N0U7 546 aa10.77□□□□□ -0.69
SHMT1-205ENST00000395684 ANKRD30BLA7E2S9 258 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 DEGS1O15121 323 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 NDUFS6O75380 124 aaKnown RBP10.76□□□□□ -0.69
SHMT1-205ENST00000395684 NEURL1O76050 574 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 ZNF16P17020 682 aaPredicted RBP10.76□□□□□ -0.69
SHMT1-205ENST00000395684 CA6P23280 308 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 MDH2P40926 338 aaKnown RBP10.76□□□□□ -0.69
SHMT1-205ENST00000395684 GNG3P63215 75 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 TCEAL6Q6IPX3 200 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 Q6P435 159 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 BEND4Q6ZU67 534 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 CT55Q8WUE5 264 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 OR4C12Q96R67 309 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 RBKSQ9H477 322 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 ZNF703Q9H7S9 590 aaPredicted RBP10.76□□□□□ -0.69
SHMT1-205ENST00000395684 BOKQ9UMX3 212 aaPredicted RBP10.76□□□□□ -0.69
SHMT1-205ENST00000395684 DOCK10Q96BY6 2186 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 A0A1W2PR80 420 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 CEBPZOSA8MTT3 80 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 PGA5P0DJD9 388 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 MDKP21741 143 aaPredicted RBP10.76□□□□□ -0.69
SHMT1-205ENST00000395684 SERF2P84101 59 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 SSPNQ14714 243 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 SPANXN5Q5MJ07 72 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 OR2M7Q8NG81 312 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 WDR61Q9GZS3 305 aaKnown RBP10.76□□□□□ -0.69
SHMT1-205ENST00000395684 OR51I2Q9H344 312 aa10.76□□□□□ -0.69
SHMT1-205ENST00000395684 OR5H1A6NKK0 313 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 NPIPB11E5RHQ5 1161 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 YKT6O15498 198 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 LY86O95711 162 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 FABP4P15090 132 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 HIST1H1BP16401 226 aaKnown RBP10.75□□□□□ -0.69
SHMT1-205ENST00000395684 DUSP3P51452 185 aaPredicted RBP10.75□□□□□ -0.69
SHMT1-205ENST00000395684 ELLP55199 621 aaPredicted RBP10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms