RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 AMMECR1Q9Y4X0 333 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-202ENST00000394943 MMP24Q9Y5R2 645 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 SPINT2O43291 252 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 PROP1O75360 226 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 TGFAP01135 160 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 SURF2Q15527 256 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-202ENST00000394943 CT45A1Q5HYN5 189 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 TMEM69Q5SWH9 247 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 TPTE2P1Q5T6R2 138 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 TCTEX1D1Q8N7M0 179 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 CT45A3Q8NHU0 189 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 MRGPRFQ96AM1 343 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 C5orf30Q96GV9 206 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 ZNF486Q96H40 463 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-202ENST00000394943 C7orf50Q9BRJ6 194 aaKnown RBP5.67□□□□□ -1.5
LIMA1-202ENST00000394943 TAS2R8Q9NYW2 309 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 HECTD1Q9ULT8 2610 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 MEIOCA2RUB1 952 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 FABP7O15540 132 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 B3GALNT1O75752 331 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 RGS11O94810 467 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 NDUFA7O95182 113 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 CD3GP09693 182 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 NDUFB7P17568 137 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 RCC1P18754 421 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-202ENST00000394943 ECI1P42126 302 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 TAS2R46P59540 309 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 FAM185AQ8N0U4 392 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 ARRDC1Q8N5I2 433 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 ASCC1Q8N9N2 400 aaKnown RBP5.67□□□□□ -1.5
LIMA1-202ENST00000394943 BOLLQ8N9W6 283 aaKnown RBP5.67□□□□□ -1.5
LIMA1-202ENST00000394943 MOB3AQ96BX8 217 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 GALMQ96C23 342 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 RSRP1Q9BUV0 290 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 RANBP3Q9H6Z4 567 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-202ENST00000394943 C7orf69Q9H7B7 122 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 ELF5Q9UKW6 265 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-202ENST00000394943 MEIKINA0A087WXM9 373 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 A6NDX4 124 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 CRYGBP07316 175 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 RNASE1P07998 156 aaKnown RBP5.66□□□□□ -1.5
LIMA1-202ENST00000394943 IGHV4-38-2P0DP08 117 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 HNF1AP20823 631 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 PRSS3P35030 304 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 SSTR5P35346 364 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 IER3P46695 156 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 UTF1Q5T230 341 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.66□□□□□ -1.5
LIMA1-202ENST00000394943 BVESQ8NE79 360 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 NPBQ8NG41 125 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 OR5AN1Q8NGI8 311 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 OR1L1Q8NH94 360 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 S100ZQ8WXG8 99 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 AKR1E2Q96JD6 320 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 HDHD3Q9BSH5 251 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-202ENST00000394943 UBE2QL1A1L167 161 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 NDUFA3O95167 84 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 CD1BP29016 333 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 PRRX1P54821 245 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 ACTBP60709 375 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 ACTG1P63261 375 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 LSAMPQ13449 338 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 POU2AF1Q16633 256 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 AARDQ4LEZ3 155 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 EXTL2Q9UBQ6 330 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 CUBNO60494 3623 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 TRAV18A0A075B6X5 111 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 TMEM235A6NFC5 223 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 CSF1P09603 554 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 SCTP09683 121 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 GSTT2P0CG29 244 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 GSTT2BP0CG30 244 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 ZBTB25P24278 435 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 DHODHQ02127 395 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 CARTPTQ16568 116 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 C19orf54Q5BKX5 351 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 ATAD3CQ5T2N8 411 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 PRAMEF5Q5TYX0 476 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 AADACL3Q5VUY0 350 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 MRGPRDQ8TDS7 321 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 SUCNR1Q9BXA5 334 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 FXYD6Q9H0Q3 95 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 KCNIP1Q9NZI2 227 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 COMMD3Q9UBI1 195 aa5.66□□□□□ -1.5
LIMA1-202ENST00000394943 ZFHX3Q15911 3703 aa5.65□□□□□ -1.5
LIMA1-202ENST00000394943 SDCBPO00560 298 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-202ENST00000394943 RBFOX2O43251 390 aaKnown RBP eCLIP5.65□□□□□ -1.5
LIMA1-202ENST00000394943 ABHD12Q8N2K0 398 aa5.65□□□□□ -1.5
LIMA1-202ENST00000394943 ZDHHC22Q8N966 263 aa5.65□□□□□ -1.5
LIMA1-202ENST00000394943 OR5R1Q8NH85 324 aa5.65□□□□□ -1.5
LIMA1-202ENST00000394943 EDARADDQ8WWZ3 215 aa5.65□□□□□ -1.5
LIMA1-202ENST00000394943 SMR3AQ99954 134 aa5.65□□□□□ -1.5
LIMA1-202ENST00000394943 NECAP2Q9NVZ3 263 aa5.65□□□□□ -1.5
LIMA1-202ENST00000394943 PIPOXQ9P0Z9 390 aa5.65□□□□□ -1.5
LIMA1-202ENST00000394943 TRAPPC2LQ9UL33 140 aa5.65□□□□□ -1.5
LIMA1-202ENST00000394943 OR2W1Q9Y3N9 320 aa5.65□□□□□ -1.5
LIMA1-202ENST00000394943 CMYA5Q8N3K9 4069 aa5.65□□□□□ -1.5
LIMA1-202ENST00000394943 SVEP1Q4LDE5 3571 aa5.65□□□□□ -1.51
LIMA1-202ENST00000394943 KCTD9Q7L273 389 aa5.65□□□□□ -1.51
LIMA1-202ENST00000394943 TRAPPC6BQ86SZ2 158 aa5.65□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms