RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 OR2C3Q8N628 320 aa12.18□□□□□ -0.46
SHROOM1-203ENST00000378679 RBMXL3Q8N7X1 1067 aaKnown RBP12.18□□□□□ -0.46
SHROOM1-203ENST00000378679 FGFBP3Q8TAT2 258 aa12.18□□□□□ -0.46
SHROOM1-203ENST00000378679 RXFP4Q8TDU9 374 aa12.18□□□□□ -0.46
SHROOM1-203ENST00000378679 REPIN1Q9BWE0 567 aaKnown RBP12.18□□□□□ -0.46
SHROOM1-203ENST00000378679 DLL3Q9NYJ7 618 aa12.18□□□□□ -0.46
SHROOM1-203ENST00000378679 HSF4Q9ULV5 492 aa12.18□□□□□ -0.46
SHROOM1-203ENST00000378679 GPR132Q9UNW8 380 aa12.18□□□□□ -0.46
SHROOM1-203ENST00000378679 KIAA2026Q5HYC2 2103 aa12.18□□□□□ -0.46
SHROOM1-203ENST00000378679 MFNGO00587 321 aa12.18□□□□□ -0.46
SHROOM1-203ENST00000378679 IGFBP3P17936 291 aaPredicted RBP12.18□□□□□ -0.46
SHROOM1-203ENST00000378679 MOB3BQ86TA1 216 aa12.18□□□□□ -0.46
SHROOM1-203ENST00000378679 RAB1CQ92928 201 aa12.18□□□□□ -0.46
SHROOM1-203ENST00000378679 FOXD3Q9UJU5 478 aaPredicted RBP12.18□□□□□ -0.46
SHROOM1-203ENST00000378679 V9GYS6 101 aa12.18□□□□□ -0.46
SHROOM1-203ENST00000378679 KIAA1671Q9BY89 1806 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 MFSD2BA6NFX1 497 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 CEBPDP49716 269 aaPredicted RBP12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 COL10A1Q03692 680 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 MIDNQ504T8 468 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 LINC00596Q86U02 117 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 C1QTNF5Q9BXJ0 243 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 PKIBQ9C010 78 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 ARV1Q9H2C2 271 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 UQCC1Q9NVA1 299 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 MED9Q9NWA0 146 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 SHANK1Q9Y566 2161 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 HMGB3O15347 200 aaKnown RBP12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 PPP1CCP36873 323 aaKnown RBP12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 MRPS11P82912 194 aaKnown RBP12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 LILRB1Q8NHL6 650 aaPredicted RBP12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 PINX1Q96BK5 328 aaKnown RBP12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 TLNRD1Q9H1K6 362 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 IGKV1-9A0A0C4DH69 117 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 SCGB1D1O95968 90 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 S100A8P05109 93 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 CD37P11049 281 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 RPS2P15880 293 aaKnown RBP12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 COX7A1P24310 79 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 CHRNB4P30926 498 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 RAB7AP51149 207 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 SUB1P53999 127 aaKnown RBP eCLIP12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 PLAC9Q5JTB6 97 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 ZNF665Q9H7R5 613 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 FBXL17Q9UF56 701 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 OBSL1O75147 1896 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 GTF3C1Q12789 2109 aa12.17□□□□□ -0.46
SHROOM1-203ENST00000378679 CST4P01036 141 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 HRASP01112 189 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 CELA3BP08861 270 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 RAB4BP61018 213 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 ERHP84090 104 aaKnown RBP12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 PJVKQ0ZLH3 352 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 STUMQ69YW2 141 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 UBAC2Q8NBM4 344 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 OR5C1Q8NGR4 320 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 LHX4Q969G2 390 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 KPTNQ9Y664 436 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 DOCK10Q96BY6 2186 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 DLL1O00548 723 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 METTL15P1P0C7V9 234 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 TMEM50BP56557 158 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 NAAAQ02083 359 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 TIMM23BQ5SRD1 257 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 POM121L2Q96KW2 1035 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 NIPSNAP3BQ9BS92 247 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 KCNIP2Q9NS61 270 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 ONECUT1Q9UBC0 465 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 TMEM33P57088 247 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 GNB2P62879 340 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 NHLRC3Q5JS37 347 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 RAB40CQ96S21 281 aa12.16□□□□□ -0.46
SHROOM1-203ENST00000378679 IGKV3D-15A0A087WSY6 115 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 FAM90A10PA6NDY2 464 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 FAM90A18PA6NE21 464 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 FAM90A16PA6NEW6 464 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 FAM90A20PA6NIJ5 464 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 FAM90A8PA6NJQ4 464 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 FAM90A7PA6NKC0 464 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 FAM90A22PA8MWA6 464 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 FAM90A12PA8MX19 464 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 FAM90A5PA8MXJ8 464 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 FAM90A23PA8MXZ1 464 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 FAM90A15PP0C7V4 464 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 FAM90A13PP0C7W8 464 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 FAM90A14PP0C7W9 464 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 FAM90A24PP0C7X0 464 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 ID4P47928 161 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 ADIRFQ15847 76 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 MRGPRFQ96AM1 343 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 SLC35E1Q96K37 410 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 CCL13Q99616 98 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 OR4A8P0C604 315 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 FABP4P15090 132 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 ZNF154Q13106 437 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 SPACA3Q8IXA5 215 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 ZNF561Q8N587 486 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 LFNGQ8NES3 379 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 GPHA2Q96T91 129 aa12.15□□□□□ -0.46
SHROOM1-203ENST00000378679 TOLLIPQ9H0E2 274 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms