RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 PIANPQ8IYJ0 282 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 ATOH7Q8N100 152 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 OSR2Q8N2R0 312 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 WDTC1Q8N5D0 677 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 NKAIN3Q8N8D7 197 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 OR10D4PQ8NGN7 298 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 METRNQ9UJH8 293 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 NSG2Q9Y328 171 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 CHD2O14647 1828 aaKnown RBP4.09□□□□□ -1.75
SCN1A-202ENST00000375405 TMEM129A0AVI4 362 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 H3BMH7 237 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 SPI1P17947 270 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 RPS19P39019 145 aaKnown RBP4.09□□□□□ -1.75
SCN1A-202ENST00000375405 VDAC2P45880 294 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-202ENST00000375405 DHRS2Q13268 280 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 LDLRAD2Q5SZI1 272 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 ZDHHC22Q8N966 263 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 OR4D5Q8NGN0 318 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 ZNF430Q9H8G1 570 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-202ENST00000375405 SETBP1Q9Y6X0 1596 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 IQGAP1P46940 1657 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 PIK3C2BO00750 1634 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 CD163L1Q9NR16 1453 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 FRMPD1Q5SYB0 1578 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 H7C1H1 209 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 NDUFA3O95167 84 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 ERVK11-1P61568 191 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 GGTA1PQ4G0N0 100 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 YOD1Q5VVQ6 348 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-202ENST00000375405 FCRL1Q96LA6 429 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 CSF3RQ99062 836 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 OPN4Q9UHM6 478 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 A0A0G2JLL6 359 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-202ENST00000375405 FAM72CH0Y354 149 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 PPP6CO00743 305 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 SAP30O75446 220 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 ETHE1O95571 254 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 HMGN2P05204 90 aaKnown RBP4.09□□□□□ -1.75
SCN1A-202ENST00000375405 CEACAM5P06731 702 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 SLC6A1P30531 599 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 GATA4P43694 442 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 RAB38P57729 211 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 PAPPA-AS1Q5QFB9 102 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 FAM72AQ5TYM5 149 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 FAM72DQ6L9T8 149 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 PRRT2Q7Z6L0 340 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-202ENST00000375405 B3GNT8Q7Z7M8 397 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 FAM72BQ86X60 149 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 WDFY1Q8IWB7 410 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 ANKRD29Q8N6D5 301 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 DEFB105AQ8NG35 78 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 GLMPQ8WWB7 406 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 C5orf30Q96GV9 206 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 PEAK1Q9H792 1746 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 POLR2AP24928 1970 aaKnown RBP4.09□□□□□ -1.75
SCN1A-202ENST00000375405 TLCD2A6NGC4 264 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 MBTPS2O43462 519 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 LINC00869P0C866 280 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 RPL12P30050 165 aaKnown RBP4.09□□□□□ -1.75
SCN1A-202ENST00000375405 VEGFBP49765 207 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 ASAH1Q13510 395 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 GAGE2EQ4V326 116 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 GHSRQ92847 366 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 WDFY2Q96P53 400 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 GAGE2DQ9UEU5 116 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 DIP2BQ9P265 1576 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 ADAMTS13Q76LX8 1427 aa4.09□□□□□ -1.75
SCN1A-202ENST00000375405 IQCF3P0C7M6 154 aa4.09□□□□□ -1.76
SCN1A-202ENST00000375405 LPAR6P43657 344 aa4.09□□□□□ -1.76
SCN1A-202ENST00000375405 PDLIM4P50479 330 aa4.09□□□□□ -1.76
SCN1A-202ENST00000375405 KHSRPQ92945 711 aaKnown RBP eCLIP4.09□□□□□ -1.762e-6■■■□□ 17.2
SCN1A-202ENST00000375405 SMIM2Q9BVW6 85 aa4.09□□□□□ -1.76
SCN1A-202ENST00000375405 ZNF696Q9H7X3 374 aa4.09□□□□□ -1.76
SCN1A-202ENST00000375405 ZBTB42B2RXF5 422 aa4.09□□□□□ -1.76
SCN1A-202ENST00000375405 TAPBPO15533 448 aa4.09□□□□□ -1.76
SCN1A-202ENST00000375405 EEDO75530 441 aaKnown RBP4.09□□□□□ -1.76
SCN1A-202ENST00000375405 KLK2P20151 261 aa4.09□□□□□ -1.76
SCN1A-202ENST00000375405 CDAP32320 146 aa4.09□□□□□ -1.76
SCN1A-202ENST00000375405 SLC38A11Q08AI6 406 aa4.09□□□□□ -1.76
SCN1A-202ENST00000375405 TMEM155Q4W5P6 130 aa4.09□□□□□ -1.76
SCN1A-202ENST00000375405 C1orf140Q5VVS0 124 aa4.09□□□□□ -1.76
SCN1A-202ENST00000375405 NPY6RQ99463 290 aa4.09□□□□□ -1.76
SCN1A-202ENST00000375405 ERCC6L2Q5T890 1561 aa4.09□□□□□ -1.76
SCN1A-202ENST00000375405 DIP2CQ9Y2E4 1556 aa4.09□□□□□ -1.76
SCN1A-202ENST00000375405 PAPLNO95428 1278 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 CD70P32970 193 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 TNFRSF17Q02223 184 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 CASC2Q6XLA1 102 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 C1orf122Q6ZSJ8 110 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 VRK3Q8IV63 474 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 GTF3AQ92664 365 aaKnown RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 PGLYRP4Q96LB8 373 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 C18orf15Q96N68 181 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 NIPSNAP1Q9BPW8 284 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 SPCS1Q9Y6A9 102 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 NPIPB7O75200 414 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 SLC2A10O95528 541 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 GPR75O95800 540 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 GP1BAP07359 652 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 LGALS1P09382 135 aaKnown RBP4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms