RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 HIKESHIQ53FT3 197 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 RAB1BQ9H0U4 201 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 SAP30LQ9HAJ7 183 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 PIPOXQ9P0Z9 390 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 WASHC3Q9Y3C0 194 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 RIF1Q5UIP0 2472 aaKnown RBP9.95□□□□□ -0.82
PTPRF-203ENST00000372407 SH2D7A6NKC9 451 aaPredicted RBP9.95□□□□□ -0.82
PTPRF-203ENST00000372407 TMEM210A6NLX4 147 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 F5H697 171 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 SYNGR1O43759 233 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 G6PCP35575 357 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 TEPPQ6URK8 271 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 Q6ZN92 141 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 C5orf17Q8NAS9 161 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 OR5AU1Q8NGC0 362 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 HARBI1Q96MB7 349 aa9.95□□□□□ -0.82
PTPRF-203ENST00000372407 FAM90A27PA6NNH2 459 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 M0R2Z0 102 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 GNG7O60262 68 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 GREM1O60565 184 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 RCC1P18754 421 aaPredicted RBP9.94□□□□□ -0.82
PTPRF-203ENST00000372407 DCAF10Q5QP82 559 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 OR1L8Q8NGR8 309 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 A0A0G2JMZ2 1700 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 SNCGO76070 127 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 PRSS1P07477 247 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 HOXA6P31267 233 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 OVCH2Q7RTZ1 564 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 FLYWCH2Q96CP2 140 aaKnown RBP9.94□□□□□ -0.82
PTPRF-203ENST00000372407 MS4A5Q9H3V2 200 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 ZNF665Q9H7R5 613 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 C1RLQ9NZP8 487 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 CACNA1GO43497 2377 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 IGSF23A1L1A6 192 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 CXorf1O96002 111 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 P01737 135 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 ISG15P05161 165 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 BRS3P32247 399 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 MRPL54Q6P161 138 aaKnown RBP9.94□□□□□ -0.82
PTPRF-203ENST00000372407 DPPA3Q6W0C5 159 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 RAB24Q969Q5 203 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 IGLV1-36A0A0B4J1U3 117 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 PITX3O75364 302 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 MMP9P14780 707 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 CD81P60033 236 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 TMEM255AQ5JRV8 349 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 TEX30Q5JUR7 227 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 LAIR2Q6ISS4 152 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 GUCD1Q96NT3 240 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 OR2J1Q9GZK6 312 aa9.94□□□□□ -0.82
PTPRF-203ENST00000372407 BCL2P10415 239 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 MUC1P15941 1255 aaPredicted RBP9.93□□□□□ -0.82
PTPRF-203ENST00000372407 FCARP24071 287 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 PSG4Q00888 419 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 PRSS53Q2L4Q9 553 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 VWA1Q6PCB0 445 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 OR1K1Q8NGR3 316 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 OR4X1Q8NH49 305 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 KCNK17Q96T54 332 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 NPDC1Q9NQX5 325 aaPredicted RBP9.93□□□□□ -0.82
PTPRF-203ENST00000372407 OR5AC2Q9NZP5 309 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 TUBD1Q9UJT1 453 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 SNURFLB1AK76 121 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 PIN1P1O15428 100 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 AESQ08117 197 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.93□□□□□ -0.82
PTPRF-203ENST00000372407 OR8I2Q8N0Y5 310 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 APOBEC4Q8WW27 367 aaKnown RBP9.93□□□□□ -0.82
PTPRF-203ENST00000372407 STARD4Q96DR4 205 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 INSIG2Q9Y5U4 225 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 MS4A18H0YCH9 400 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 J3QR06 171 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 ACP1P24666 158 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 FGF12P61328 243 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 RUNX1Q01196 453 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 RIGQ13278 110 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 ZNF273Q14593 569 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 MS4A18Q3C1V0 323 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 UNQ9370/PRO34162Q6UXP9 181 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 MDP1Q86V88 176 aa9.93□□□□□ -0.82
PTPRF-203ENST00000372407 PUSL1Q8N0Z8 303 aaKnown RBP9.93□□□□□ -0.82
PTPRF-203ENST00000372407 ZNF638Q14966 1978 aaKnown RBP9.93□□□□□ -0.82
PTPRF-203ENST00000372407 TRBV5-7A0A0A0MS05 114 aa9.92□□□□□ -0.82
PTPRF-203ENST00000372407 CFDP00746 253 aaPredicted RBP9.92□□□□□ -0.82
PTPRF-203ENST00000372407 F12P00748 615 aaPredicted RBP9.92□□□□□ -0.82
PTPRF-203ENST00000372407 GABRA6Q16445 453 aa9.92□□□□□ -0.82
PTPRF-203ENST00000372407 GUCA2BQ16661 112 aa9.92□□□□□ -0.82
PTPRF-203ENST00000372407 RGP1Q92546 391 aaPredicted RBP9.92□□□□□ -0.82
PTPRF-203ENST00000372407 PERPQ96FX8 193 aa9.92□□□□□ -0.82
PTPRF-203ENST00000372407 GMPPAQ96IJ6 420 aaPredicted RBP9.92□□□□□ -0.82
PTPRF-203ENST00000372407 ZNF716A6NP11 495 aa9.92□□□□□ -0.82
PTPRF-203ENST00000372407 ERVH48-1M5A8F1 160 aa9.92□□□□□ -0.82
PTPRF-203ENST00000372407 DEDDO75618 318 aa9.92□□□□□ -0.82
PTPRF-203ENST00000372407 PPP1CCP36873 323 aaKnown RBP9.92□□□□□ -0.82
PTPRF-203ENST00000372407 LGALS7P47929 136 aa9.92□□□□□ -0.82
PTPRF-203ENST00000372407 CEACAM21Q3KPI0 293 aa9.92□□□□□ -0.82
PTPRF-203ENST00000372407 CYB561D1Q8N8Q1 229 aa9.92□□□□□ -0.82
PTPRF-203ENST00000372407 NFAM1Q8NET5 270 aaPredicted RBP9.92□□□□□ -0.82
PTPRF-203ENST00000372407 SGMS2Q8NHU3 365 aa9.92□□□□□ -0.82
PTPRF-203ENST00000372407 SMPD2O60906 423 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms