RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 TOLLIPQ9H0E2 274 aa15.47■□□□□ 0.07
CLN3-204ENST00000357857 RANGRFQ9HD47 186 aaPredicted RBP15.47■□□□□ 0.07
CLN3-204ENST00000357857 MGAT4CQ9UBM8 478 aa15.47■□□□□ 0.07
CLN3-204ENST00000357857 DUS4LO95620 317 aaKnown RBP15.46■□□□□ 0.07
CLN3-204ENST00000357857 CXCL3P19876 107 aa15.46■□□□□ 0.07
CLN3-204ENST00000357857 CD34P28906 385 aa15.46■□□□□ 0.07
CLN3-204ENST00000357857 GNRHRP30968 328 aa15.46■□□□□ 0.07
CLN3-204ENST00000357857 TMEM33P57088 247 aa15.46■□□□□ 0.07
CLN3-204ENST00000357857 SUPT4H1P63272 117 aaKnown RBP15.46■□□□□ 0.07
CLN3-204ENST00000357857 GNMTQ14749 295 aa15.46■□□□□ 0.07
CLN3-204ENST00000357857 C17orf58Q2M2W7 97 aa15.46■□□□□ 0.07
CLN3-204ENST00000357857 SGPP2Q8IWX5 399 aa15.46■□□□□ 0.07
CLN3-204ENST00000357857 SPICQ8N5J4 248 aa15.46■□□□□ 0.07
CLN3-204ENST00000357857 CCDC71LQ8N9Z2 235 aa15.46■□□□□ 0.07
CLN3-204ENST00000357857 OR2AK2Q8NG84 335 aa15.46■□□□□ 0.07
CLN3-204ENST00000357857 MITD1Q8WV92 249 aa15.46■□□□□ 0.07
CLN3-204ENST00000357857 CCL19Q99731 98 aa15.46■□□□□ 0.07
CLN3-204ENST00000357857 OR2S2Q9NQN1 319 aa15.46■□□□□ 0.07
CLN3-204ENST00000357857 SLC2A9Q9NRM0 540 aa15.46■□□□□ 0.07
CLN3-204ENST00000357857 YLPM1P49750 1951 aaKnown RBP15.46■□□□□ 0.07
CLN3-204ENST00000357857 TEX13DA0A0J9YY54 714 aaPredicted RBP15.46■□□□□ 0.06
CLN3-204ENST00000357857 CRYM-AS1A6NIL9 109 aa15.46■□□□□ 0.06
CLN3-204ENST00000357857 BOLA2-SMG1P6H3BVE0 249 aa15.46■□□□□ 0.06
CLN3-204ENST00000357857 F2RL2O00254 374 aa15.46■□□□□ 0.06
CLN3-204ENST00000357857 GPR31O00270 319 aa15.46■□□□□ 0.06
CLN3-204ENST00000357857 RPS2P15880 293 aaKnown RBP15.46■□□□□ 0.06
CLN3-204ENST00000357857 RPL31P62899 125 aaKnown RBP15.46■□□□□ 0.06
CLN3-204ENST00000357857 TMEM155Q4W5P6 130 aa15.46■□□□□ 0.06
CLN3-204ENST00000357857 LDLRAD3Q86YD5 345 aa15.46■□□□□ 0.06
CLN3-204ENST00000357857 H1FXQ92522 213 aaKnown RBP15.46■□□□□ 0.06
CLN3-204ENST00000357857 PHB2Q99623 299 aa15.46■□□□□ 0.06
CLN3-204ENST00000357857 PARP12Q9H0J9 701 aaKnown RBP15.46■□□□□ 0.06
CLN3-204ENST00000357857 CCL28Q9NRJ3 127 aa15.46■□□□□ 0.06
CLN3-204ENST00000357857 C19orf12Q9NSK7 152 aa15.46■□□□□ 0.06
CLN3-204ENST00000357857 LPAR3Q9UBY5 353 aa15.46■□□□□ 0.06
CLN3-204ENST00000357857 UBE2J1Q9Y385 318 aaPredicted RBP15.46■□□□□ 0.06
CLN3-204ENST00000357857 LINC00312Q9Y6C7 94 aa15.46■□□□□ 0.06
CLN3-204ENST00000357857 IGHV3-43A0A0B4J1X8 118 aa15.45■□□□□ 0.06
CLN3-204ENST00000357857 KBTBD11-OT1A0A1B0GTJ5 212 aa15.45■□□□□ 0.06
CLN3-204ENST00000357857 ZNF729A6NN14 1252 aaPredicted RBP15.45■□□□□ 0.06
CLN3-204ENST00000357857 HSD17B6O14756 317 aa15.45■□□□□ 0.06
CLN3-204ENST00000357857 IGHV3-43DP0DP04 118 aa15.45■□□□□ 0.06
CLN3-204ENST00000357857 PPP1CCP36873 323 aaKnown RBP15.45■□□□□ 0.06
CLN3-204ENST00000357857 SLC9A3R2Q15599 337 aa15.45■□□□□ 0.06
CLN3-204ENST00000357857 LTC4SQ16873 150 aa15.45■□□□□ 0.06
CLN3-204ENST00000357857 C11orf88Q6PI97 169 aa15.45■□□□□ 0.06
CLN3-204ENST00000357857 ZNF818PQ6ZRF7 136 aa15.45■□□□□ 0.06
CLN3-204ENST00000357857 FAM185AQ8N0U4 392 aa15.45■□□□□ 0.06
CLN3-204ENST00000357857 RTN4IP1Q8WWV3 396 aaPredicted RBP15.45■□□□□ 0.06
CLN3-204ENST00000357857 CLN8Q9UBY8 286 aa15.45■□□□□ 0.06
CLN3-204ENST00000357857 MIOXQ9UGB7 285 aa15.45■□□□□ 0.06
CLN3-204ENST00000357857 JPT1Q9UK76 154 aa15.45■□□□□ 0.06
CLN3-204ENST00000357857 RBM7Q9Y580 266 aaKnown RBP15.45■□□□□ 0.06
CLN3-204ENST00000357857 RND3P61587 244 aa15.44■□□□□ 0.06
CLN3-204ENST00000357857 FAM53AQ6NSI3 398 aaPredicted RBP15.44■□□□□ 0.06
CLN3-204ENST00000357857 FYTTD1Q96QD9 318 aaKnown RBP15.44■□□□□ 0.06
CLN3-204ENST00000357857 NAA60Q9H7X0 242 aa15.44■□□□□ 0.06
CLN3-204ENST00000357857 TAS2R3Q9NYW6 316 aa15.44■□□□□ 0.06
CLN3-204ENST00000357857 GNG12Q9UBI6 72 aa15.44■□□□□ 0.06
CLN3-204ENST00000357857 LRRK2Q5S007 2527 aa15.44■□□□□ 0.06
CLN3-204ENST00000357857 COL12A1Q99715 3063 aa15.44■□□□□ 0.06
CLN3-204ENST00000357857 AKAP6Q13023 2319 aa15.44■□□□□ 0.06
CLN3-204ENST00000357857 IFNA2P01563 188 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 OR8U9P0C7N5 309 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 ANXA3P12429 323 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 OR8B3Q8NGG8 313 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 OR8U1Q8NH10 309 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 OR8B2Q96RD0 313 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 LINC00574Q9H8X3 128 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 KCNIP3Q9Y2W7 256 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 A0A0B4J2A0 478 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 GOSR2O14653 212 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 SLC22A5O76082 557 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 OMGP23515 440 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 GPR6P46095 362 aaPredicted RBP15.43■□□□□ 0.06
CLN3-204ENST00000357857 LOXL3P58215 753 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 ZNF273Q14593 569 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 C2orf68Q2NKX9 166 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 LIN54Q6MZP7 749 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 ZNF841Q6ZN19 808 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 NLRC3Q7RTR2 1065 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 CMTM1Q8IZ96 169 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 TCTE3Q8IZS6 198 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 COQ8AQ8NI60 647 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 NEIL1Q96FI4 390 aaPredicted RBP15.43■□□□□ 0.06
CLN3-204ENST00000357857 DMRTB1Q96MA1 342 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 ZNF436Q9C0F3 470 aaPredicted RBP15.43■□□□□ 0.06
CLN3-204ENST00000357857 IDI2-AS1Q9NZ38 188 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 SHPKQ9UHJ6 478 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 KCNS2Q9ULS6 477 aa15.43■□□□□ 0.06
CLN3-204ENST00000357857 MPPED1O15442 326 aa15.42■□□□□ 0.06
CLN3-204ENST00000357857 YPEL1O60688 119 aa15.42■□□□□ 0.06
CLN3-204ENST00000357857 S100GP29377 79 aa15.42■□□□□ 0.06
CLN3-204ENST00000357857 ANKRD55Q3KP44 614 aa15.42■□□□□ 0.06
CLN3-204ENST00000357857 TMEM200BQ69YZ2 307 aa15.42■□□□□ 0.06
CLN3-204ENST00000357857 KCTD9Q7L273 389 aa15.42■□□□□ 0.06
CLN3-204ENST00000357857 BVESQ8NE79 360 aa15.42■□□□□ 0.06
CLN3-204ENST00000357857 GALNT14Q96FL9 552 aa15.42■□□□□ 0.06
CLN3-204ENST00000357857 YPEL2Q96QA6 119 aa15.42■□□□□ 0.06
CLN3-204ENST00000357857 GAL3ST2Q9H3Q3 398 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms