RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 IQCF6A8MYZ5 107 aa16.36■□□□□ 0.21
COL9A3-201ENST00000343916 SERPINE2P07093 398 aa16.36■□□□□ 0.21
COL9A3-201ENST00000343916 DUXBA0A1W2PPF3 345 aa16.36■□□□□ 0.21
COL9A3-201ENST00000343916 H3BP45 60 aa16.36■□□□□ 0.21
COL9A3-201ENST00000343916 WNT9BO14905 357 aa16.36■□□□□ 0.21
COL9A3-201ENST00000343916 TFF1P04155 84 aa16.36■□□□□ 0.21
COL9A3-201ENST00000343916 ATP6V0CP27449 155 aa16.36■□□□□ 0.21
COL9A3-201ENST00000343916 S100GP29377 79 aa16.36■□□□□ 0.21
COL9A3-201ENST00000343916 TCF15Q12870 199 aa16.36■□□□□ 0.21
COL9A3-201ENST00000343916 INO80CQ6PI98 192 aaPredicted RBP16.36■□□□□ 0.21
COL9A3-201ENST00000343916 Q8IYB0 196 aa16.36■□□□□ 0.21
COL9A3-201ENST00000343916 FAM213BQ8TBF2 198 aa16.36■□□□□ 0.21
COL9A3-201ENST00000343916 HIST1H2BAQ96A08 127 aa16.36■□□□□ 0.21
COL9A3-201ENST00000343916 GPR146Q96CH1 333 aa16.36■□□□□ 0.21
COL9A3-201ENST00000343916 ABHD14AQ9BUJ0 271 aa16.36■□□□□ 0.21
COL9A3-201ENST00000343916 EIF5A2Q9GZV4 153 aaKnown RBP16.36■□□□□ 0.21
COL9A3-201ENST00000343916 KCNS2Q9ULS6 477 aa16.36■□□□□ 0.21
COL9A3-201ENST00000343916 WRBO00258 174 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 MLNRO43193 412 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 PSPNO60542 156 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 ZNF16P17020 682 aaPredicted RBP16.35■□□□□ 0.21
COL9A3-201ENST00000343916 PTAFRP25105 342 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 DYNLT3P51808 116 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 Q6ZRM9 215 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 ISOC2Q96AB3 205 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 C20orf24Q9BUV8 137 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 SCRT1Q9BWW7 348 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 RNF115Q9Y4L5 304 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 PRR33A8MZF0 331 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 WDR1O75083 606 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 PITX3O75364 302 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 IGKV1-39P01597 117 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 IGKV1D-39P04432 117 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 PPP1CCP36873 323 aaKnown RBP16.35■□□□□ 0.21
COL9A3-201ENST00000343916 MDH2P40926 338 aaKnown RBP16.35■□□□□ 0.21
COL9A3-201ENST00000343916 S100A12P80511 92 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 ZNF266Q14584 549 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 ZNF146Q15072 292 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 GUK1Q16774 197 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 DEFB109BQ30KR1 87 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 WDR31Q8NA23 367 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 OR2G3Q8NGZ4 309 aa16.35■□□□□ 0.21
COL9A3-201ENST00000343916 CACNA1GO43497 2377 aa16.34■□□□□ 0.21
COL9A3-201ENST00000343916 C1orf196B1AJZ1 125 aa16.34■□□□□ 0.21
COL9A3-201ENST00000343916 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.34■□□□□ 0.21
COL9A3-201ENST00000343916 SH2D1BO14796 132 aa16.34■□□□□ 0.21
COL9A3-201ENST00000343916 SNRNP70P08621 437 aaKnown RBP16.34■□□□□ 0.21
COL9A3-201ENST00000343916 HOXB1P14653 301 aaPredicted RBP16.34■□□□□ 0.21
COL9A3-201ENST00000343916 DAOP14920 347 aa16.34■□□□□ 0.21
COL9A3-201ENST00000343916 HOXC12P31275 282 aa16.34■□□□□ 0.21
COL9A3-201ENST00000343916 PAX9P55771 341 aa16.34■□□□□ 0.21
COL9A3-201ENST00000343916 FAM53AQ6NSI3 398 aaPredicted RBP16.34■□□□□ 0.21
COL9A3-201ENST00000343916 C15orf54Q8N8G6 183 aa16.34■□□□□ 0.21
COL9A3-201ENST00000343916 RNASE11Q8TAA1 199 aaKnown RBP16.34■□□□□ 0.21
COL9A3-201ENST00000343916 IL22RA2Q969J5 263 aa16.34■□□□□ 0.21
COL9A3-201ENST00000343916 SLC25A31Q9H0C2 315 aa16.34■□□□□ 0.21
COL9A3-201ENST00000343916 TREM2Q9NZC2 230 aa16.34■□□□□ 0.21
COL9A3-201ENST00000343916 IGKV3-15P01624 115 aa16.34■□□□□ 0.21
COL9A3-201ENST00000343916 FOLR2P14207 255 aa16.34■□□□□ 0.21
COL9A3-201ENST00000343916 CEACAM6P40199 344 aa16.34■□□□□ 0.21
COL9A3-201ENST00000343916 NUBP1P53384 320 aa16.34■□□□□ 0.21
COL9A3-201ENST00000343916 RUNX1Q01196 453 aa16.34■□□□□ 0.21
COL9A3-201ENST00000343916 IGFL2Q6UWQ7 119 aa16.34■□□□□ 0.21
COL9A3-201ENST00000343916 MGAQ8IWI9 3026 aa16.33■□□□□ 0.21
COL9A3-201ENST00000343916 TRAV17A0A0B4J275 112 aa16.33■□□□□ 0.2
COL9A3-201ENST00000343916 A0A1W2PPE3 182 aa16.33■□□□□ 0.2
COL9A3-201ENST00000343916 K7N7A8 449 aa16.33■□□□□ 0.2
COL9A3-201ENST00000343916 GPR37O15354 613 aa16.33■□□□□ 0.2
COL9A3-201ENST00000343916 HAND1O96004 215 aa16.33■□□□□ 0.2
COL9A3-201ENST00000343916 AWAT1Q58HT5 328 aa16.33■□□□□ 0.2
COL9A3-201ENST00000343916 KPTNQ9Y664 436 aa16.33■□□□□ 0.2
COL9A3-201ENST00000343916 NPIPB11E5RHQ5 1161 aa16.33■□□□□ 0.2
COL9A3-201ENST00000343916 AQP7O14520 342 aa16.33■□□□□ 0.2
COL9A3-201ENST00000343916 S100A6P06703 90 aa16.33■□□□□ 0.2
COL9A3-201ENST00000343916 FABP6P51161 128 aa16.33■□□□□ 0.2
COL9A3-201ENST00000343916 MOB1BQ7L9L4 216 aa16.33■□□□□ 0.2
COL9A3-201ENST00000343916 MSL2Q9HCI7 577 aa16.33■□□□□ 0.2
COL9A3-201ENST00000343916 UFSP2Q9NUQ7 469 aa16.33■□□□□ 0.2
COL9A3-201ENST00000343916 FBXO7Q9Y3I1 522 aa16.33■□□□□ 0.2
COL9A3-201ENST00000343916 HEATR1Q9H583 2144 aaKnown RBP16.32■□□□□ 0.2
COL9A3-201ENST00000343916 A6NLC8 198 aa16.32■□□□□ 0.2
COL9A3-201ENST00000343916 COX5AP20674 150 aa16.32■□□□□ 0.2
COL9A3-201ENST00000343916 RAB5CP51148 216 aa16.32■□□□□ 0.2
COL9A3-201ENST00000343916 EIF2S3LQ2VIR3 472 aaKnown RBP16.32■□□□□ 0.2
COL9A3-201ENST00000343916 PRAMEF6Q5VXH4 476 aa16.32■□□□□ 0.2
COL9A3-201ENST00000343916 ZNF295-AS1Q8N0V1 137 aa16.32■□□□□ 0.2
COL9A3-201ENST00000343916 PRSS33Q8NF86 280 aa16.32■□□□□ 0.2
COL9A3-201ENST00000343916 ABHD14BQ96IU4 210 aa16.32■□□□□ 0.2
COL9A3-201ENST00000343916 MBNL3Q9NUK0 354 aaKnown RBP16.32■□□□□ 0.2
COL9A3-201ENST00000343916 STRAPQ9Y3F4 350 aaKnown RBP16.32■□□□□ 0.2
COL9A3-201ENST00000343916 LINC00587B1AMM8 73 aa16.31■□□□□ 0.2
COL9A3-201ENST00000343916 M0R036 132 aa16.31■□□□□ 0.2
COL9A3-201ENST00000343916 CECR9P0C854 216 aa16.31■□□□□ 0.2
COL9A3-201ENST00000343916 KRBOX4Q5JUW0 171 aa16.31■□□□□ 0.2
COL9A3-201ENST00000343916 C11orf53Q8IXP5 236 aa16.31■□□□□ 0.2
COL9A3-201ENST00000343916 TAAR6Q96RI8 345 aa16.31■□□□□ 0.2
COL9A3-201ENST00000343916 CACNG5Q9UF02 275 aa16.31■□□□□ 0.2
COL9A3-201ENST00000343916 C5orf52A6NGY3 159 aa16.31■□□□□ 0.2
COL9A3-201ENST00000343916 CNOT4O95628 575 aaKnown RBP16.31■□□□□ 0.2
COL9A3-201ENST00000343916 OR8G5Q8NG78 346 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms