RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 PPIAL4FP0DN26 164 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 SELLP14151 372 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 ZNF818PQ6ZRF7 136 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 ZNF565Q8N9K5 539 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 UBALD1Q8TB05 177 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 KCNIP3Q9Y2W7 256 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 PPIAL4AQ9Y536 164 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 KIAA2026Q5HYC2 2103 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 IGHV1-69-2A0A0G2JMI3 117 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 A0A1B0GW55 424 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 CCSO14618 274 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 TNFRSF13BO14836 293 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-202ENST00000338045 MPPED1O15442 326 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 HSPA12AO43301 675 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 CD8AP01732 235 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 DUX4L2P0CJ85 424 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 DUX4L3P0CJ86 424 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 DUX4L4P0CJ87 422 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 DUX4L5P0CJ88 424 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 DUX4L6P0CJ89 424 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 DUX4L7P0CJ90 424 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 GZMHP20718 246 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 LAMTOR1Q6IAA8 161 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 C11orf71Q6IPW1 123 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 DUX4L9Q6RFH8 374 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-202ENST00000338045 OR10V1Q8NGI7 309 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 CCL13Q99616 98 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 CBLN4Q9NTU7 201 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 RDH8Q9NYR8 311 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 PRR13Q9NZ81 148 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 DUX4Q9UBX2 424 aa12.87□□□□□ -0.35
LIMS1-202ENST00000338045 PRB1P04280 392 aa12.86□□□□□ -0.35
LIMS1-202ENST00000338045 IL2RGP31785 369 aa12.86□□□□□ -0.35
LIMS1-202ENST00000338045 SSTR5P35346 364 aa12.86□□□□□ -0.35
LIMS1-202ENST00000338045 CEACAM6P40199 344 aa12.86□□□□□ -0.35
LIMS1-202ENST00000338045 ARHGDIBP52566 201 aa12.86□□□□□ -0.35
LIMS1-202ENST00000338045 HTD2P86397 168 aa12.86□□□□□ -0.35
LIMS1-202ENST00000338045 TMEM187Q14656 261 aa12.86□□□□□ -0.35
LIMS1-202ENST00000338045 ZNF843Q8N446 348 aa12.86□□□□□ -0.35
LIMS1-202ENST00000338045 BVESQ8NE79 360 aa12.86□□□□□ -0.35
LIMS1-202ENST00000338045 DCTN5Q9BTE1 182 aa12.86□□□□□ -0.35
LIMS1-202ENST00000338045 SUCNR1Q9BXA5 334 aa12.86□□□□□ -0.35
LIMS1-202ENST00000338045 CCL28Q9NRJ3 127 aa12.86□□□□□ -0.35
LIMS1-202ENST00000338045 OR6C3Q9NZP0 311 aa12.86□□□□□ -0.35
LIMS1-202ENST00000338045 PFDN2Q9UHV9 154 aa12.86□□□□□ -0.35
LIMS1-202ENST00000338045 TRIM77I1YAP6 450 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 OR5AC1P0C628 307 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 CGB3P0DN86 165 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 CGB7P0DN87 165 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 LUMP51884 338 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-202ENST00000338045 DTX2Q86UW9 622 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 C9orf62Q8N4C0 152 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 FAM216BQ8N7L0 139 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 LRTM2Q8N967 370 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 GLYATL2Q8WU03 294 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 ARL11Q969Q4 196 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 C14orf79Q96F83 325 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 PARP12Q9H0J9 701 aaKnown RBP12.85□□□□□ -0.35
LIMS1-202ENST00000338045 RAI1Q7Z5J4 1906 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-202ENST00000338045 A0A1W2PPR1 153 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 NKX6-3A6NJ46 265 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 SHOXO15266 292 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 ST8SIA5O15466 376 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 SPINT2O43291 252 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 FSTL3O95633 263 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 IGLV2-14P01704 120 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 DANCRP0C864 163 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 EDDM3BP56851 147 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 CMTM1Q8IZ96 169 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 MSI2Q96DH6 328 aaKnown RBP12.85□□□□□ -0.35
LIMS1-202ENST00000338045 VRK1Q99986 396 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-202ENST00000338045 PLSCR3Q9NRY6 295 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 NUP50Q9UKX7 468 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 BOLA1Q9Y3E2 137 aa12.85□□□□□ -0.35
LIMS1-202ENST00000338045 HSD17B6O14756 317 aa12.84□□□□□ -0.35
LIMS1-202ENST00000338045 ADAP1O75689 374 aa12.84□□□□□ -0.35
LIMS1-202ENST00000338045 WNT2P09544 360 aa12.84□□□□□ -0.35
LIMS1-202ENST00000338045 HFEQ30201 348 aa12.84□□□□□ -0.35
LIMS1-202ENST00000338045 GSG1LQ6UXU4 331 aa12.84□□□□□ -0.35
LIMS1-202ENST00000338045 LIAT1Q6ZQX7 453 aa12.84□□□□□ -0.35
LIMS1-202ENST00000338045 TBC1D26Q86UD7 250 aa12.84□□□□□ -0.35
LIMS1-202ENST00000338045 OR52L2PQ8NGH6 319 aa12.84□□□□□ -0.35
LIMS1-202ENST00000338045 SEC22AQ96IW7 307 aa12.84□□□□□ -0.35
LIMS1-202ENST00000338045 AKR1E2Q96JD6 320 aa12.84□□□□□ -0.35
LIMS1-202ENST00000338045 TP53RKQ96S44 253 aa12.84□□□□□ -0.35
LIMS1-202ENST00000338045 PDCD10Q9BUL8 212 aa12.84□□□□□ -0.35
LIMS1-202ENST00000338045 C3orf85A0A1B0GTC6 90 aa12.83□□□□□ -0.36
LIMS1-202ENST00000338045 F2RL2O00254 374 aa12.83□□□□□ -0.36
LIMS1-202ENST00000338045 TMPRSS2O15393 492 aa12.83□□□□□ -0.36
LIMS1-202ENST00000338045 PGLYRP1O75594 196 aaPredicted RBP12.83□□□□□ -0.36
LIMS1-202ENST00000338045 C1QL1O75973 258 aa12.83□□□□□ -0.36
LIMS1-202ENST00000338045 SOD3P08294 240 aa12.83□□□□□ -0.36
LIMS1-202ENST00000338045 IFITM2Q01629 132 aa12.83□□□□□ -0.36
LIMS1-202ENST00000338045 GNMTQ14749 295 aa12.83□□□□□ -0.36
LIMS1-202ENST00000338045 SP6Q3SY56 376 aa12.83□□□□□ -0.36
LIMS1-202ENST00000338045 GRPEL2Q8TAA5 225 aa12.83□□□□□ -0.36
LIMS1-202ENST00000338045 NMES1Q9C002 83 aa12.83□□□□□ -0.36
LIMS1-202ENST00000338045 KAAG1Q9UBP8 84 aa12.83□□□□□ -0.36
LIMS1-202ENST00000338045 TRAV14DV4A0A0A6YYC5 116 aa12.82□□□□□ -0.36
LIMS1-202ENST00000338045 C5orf51A6NDU8 294 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms