RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 TMEM116Q8NCL8 245 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 OR13G1Q8NGZ3 307 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 SPOCK3Q9BQ16 436 aa10.05□□□□□ -0.8
VPS39-201ENST00000318006 HAND1O96004 215 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 P2RY4P51582 365 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 ZNF260Q3ZCT1 412 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 C9orf40Q8IXQ3 194 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 TMEM183AQ8IXX5 376 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 LRRC75AQ8NAA5 344 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 APCDD1LQ8NCL9 501 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 OR10AD1Q8NGE0 317 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 CT55Q8WUE5 264 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 MRGPRFQ96AM1 343 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 WIPI2Q9Y4P8 454 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 DEFB108AA8MXU0 73 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 CA2P00918 260 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 CRYABP02511 175 aaKnown RBP10.04□□□□□ -0.8
VPS39-201ENST00000318006 SOD3P08294 240 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 DANCRP0C864 163 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 HIST1H1EP10412 219 aaKnown RBP10.04□□□□□ -0.8
VPS39-201ENST00000318006 PSMB2P49721 201 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 MGAT2Q10469 447 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 ZNF665Q9H7R5 613 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 KCNMB2Q9Y691 235 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 UNC13CQ8NB66 2214 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 NCBP2LA6PVI3 153 aaKnown RBP10.04□□□□□ -0.8
VPS39-201ENST00000318006 SNCGO76070 127 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 PPP1CCP36873 323 aaKnown RBP10.04□□□□□ -0.8
VPS39-201ENST00000318006 FDX2Q6P4F2 183 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 SSMEM1Q8WWF3 244 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 R3HDM4Q96D70 268 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 KLHDC2Q9Y2U9 406 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 FAM186AA6NE01 2351 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 MELTFP08582 738 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 FABP2P12104 132 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.04□□□□□ -0.8
VPS39-201ENST00000318006 DEFB124Q8NES8 71 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 TXNDC17Q9BRA2 123 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 TMEM204Q9BSN7 226 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 ZFP30Q9Y2G7 519 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 OTOFQ9HC10 1997 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 WDR90Q96KV7 1748 aa10.04□□□□□ -0.8
VPS39-201ENST00000318006 CA6P23280 308 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 G6PCP35575 357 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 ZXDCQ2QGD7 858 aaPredicted RBP10.03□□□□□ -0.8
VPS39-201ENST00000318006 HES3Q5TGS1 186 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 SCGB1D4Q6XE38 83 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 MOB3AQ96BX8 217 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 PRSS27Q9BQR3 290 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 BRCA1P38398 1863 aaKnown RBP10.03□□□□□ -0.8
VPS39-201ENST00000318006 OR2T8A6NH00 312 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 KLK10O43240 276 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 BGLAPP02818 100 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 TRIP6Q15654 476 aaKnown RBP10.03□□□□□ -0.8
VPS39-201ENST00000318006 WDR25Q64LD2 544 aaPredicted RBP10.03□□□□□ -0.8
VPS39-201ENST00000318006 LYG1Q8N1E2 194 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 TIMD4Q96H15 378 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 RARRES2Q99969 163 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 OR2W1Q9Y3N9 320 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 ACTL6AO96019 429 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 RPL7P18124 248 aaKnown RBP10.03□□□□□ -0.8
VPS39-201ENST00000318006 GAB4Q2WGN9 574 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 ZPLD1Q8TCW7 415 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 ZNF721Q8TF20 911 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 ABHD14BQ96IU4 210 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 IGKV1D-16P01601 117 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 RBP4P02753 201 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 CD74P04233 296 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 COL8A1P27658 744 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 ID4P47928 161 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 AESQ08117 197 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 ZNF519Q8TB69 540 aa10.03□□□□□ -0.8
VPS39-201ENST00000318006 SF3B5Q9BWJ5 86 aaKnown RBP10.03□□□□□ -0.8
VPS39-201ENST00000318006 MFAP2P55001 183 aa10.02□□□□□ -0.8
VPS39-201ENST00000318006 PRSS53Q2L4Q9 553 aa10.02□□□□□ -0.8
VPS39-201ENST00000318006 OR8A1Q8NGG7 326 aa10.02□□□□□ -0.8
VPS39-201ENST00000318006 OR4S2Q8NH73 311 aa10.02□□□□□ -0.8
VPS39-201ENST00000318006 CHST5Q9GZS9 411 aa10.02□□□□□ -0.8
VPS39-201ENST00000318006 CISD1Q9NZ45 108 aaKnown RBP10.02□□□□□ -0.8
VPS39-201ENST00000318006 DICER1Q9UPY3 1922 aaKnown RBP10.02□□□□□ -0.81
VPS39-201ENST00000318006 PATE4P0C8F1 98 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 PNLIPP16233 465 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 DMRTA1Q5VZB9 504 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 SPINK14Q6IE38 97 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 UNQ9370/PRO34162Q6UXP9 181 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 C5orf17Q8NAS9 161 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 ZNF501Q96CX3 271 aaPredicted RBP10.02□□□□□ -0.81
VPS39-201ENST00000318006 SMIM12Q96EX1 92 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 MISP3Q96FF7 219 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 RSG1Q9BU20 258 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 SAP30LQ9HAJ7 183 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 FOXJ2Q9P0K8 574 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 CDC42EP3Q9UKI2 254 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 MPC1Q9Y5U8 109 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 RLFQ13129 1914 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 PTPRFP10586 1907 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 A0A1W2PN81 502 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 EPOPA6NHQ4 379 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 HLA-DQA1P01909 254 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 COMPP49747 757 aaPredicted RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms