RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 DDI2Q5TDH0 399 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 OVCH2Q7RTZ1 564 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 MINDY2Q8NBR6 621 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 CT45A3Q8NHU0 189 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 TMEM106AQ96A25 262 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 ISOC1Q96CN7 298 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 MRPS24Q96EL2 167 aaKnown RBP11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 OR5B12Q96R08 314 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 ZNF581Q9P0T4 197 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 GMPPBQ9Y5P6 360 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 G3V318 75 aa11.44□□□□□ -0.58
CCDC88B-201ENST00000301897 LDLRAD4O15165 306 aa11.44□□□□□ -0.58
CCDC88B-201ENST00000301897 ATP6V0E1O15342 81 aa11.44□□□□□ -0.58
CCDC88B-201ENST00000301897 SLC31A2O15432 143 aa11.44□□□□□ -0.58
CCDC88B-201ENST00000301897 NBR2O15453 112 aa11.44□□□□□ -0.58
CCDC88B-201ENST00000301897 HBZP02008 142 aa11.44□□□□□ -0.58
CCDC88B-201ENST00000301897 GABRB1P18505 474 aa11.44□□□□□ -0.58
CCDC88B-201ENST00000301897 BDKRB2P30411 391 aa11.44□□□□□ -0.58
CCDC88B-201ENST00000301897 ZNF134P52741 427 aa11.44□□□□□ -0.58
CCDC88B-201ENST00000301897 ACTBP60709 375 aa11.44□□□□□ -0.58
CCDC88B-201ENST00000301897 SYT6Q5T7P8 510 aaPredicted RBP11.44□□□□□ -0.58
CCDC88B-201ENST00000301897 ACSM6Q6P461 480 aa11.44□□□□□ -0.58
CCDC88B-201ENST00000301897 ZNF554Q86TJ5 538 aa11.44□□□□□ -0.58
CCDC88B-201ENST00000301897 TCTEX1D1Q8N7M0 179 aa11.44□□□□□ -0.58
CCDC88B-201ENST00000301897 ETAA1Q9NY74 926 aa11.44□□□□□ -0.58
CCDC88B-201ENST00000301897 KIAA1456Q9P272 454 aa11.44□□□□□ -0.58
CCDC88B-201ENST00000301897 AASSQ9UDR5 926 aa11.44□□□□□ -0.58
CCDC88B-201ENST00000301897 IGHV7-81A0A0B4J1V7 117 aa11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 GLAP06280 429 aa11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 C5orf64Q2M2E5 130 aa11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 ZIK1Q3SY52 487 aaPredicted RBP11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 SLC22A6Q4U2R8 563 aa11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 PYHIN1Q6K0P9 492 aa11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 LIN54Q6MZP7 749 aa11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 RPL22L1Q6P5R6 122 aaKnown RBP11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 LYPD6Q86Y78 171 aa11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 GAPTQ8N292 157 aa11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 PRR18Q8N4B5 295 aa11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 OR10V1Q8NGI7 309 aa11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 DLX4Q92988 240 aaPredicted RBP11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 OR4C12Q96R67 309 aa11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 TM2D3Q9BRN9 247 aa11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 KCNIP1Q9NZI2 227 aa11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 RCC2Q9P258 522 aaKnown RBP11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 SACSQ9NZJ4 4579 aa11.43□□□□□ -0.58
CCDC88B-201ENST00000301897 FAM90A7PA6NKC0 464 aa11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 FAM90A23PA8MXZ1 464 aa11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 EI24O14681 340 aa11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 ATP5HO75947 161 aa11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 RGS11O94810 467 aa11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 LGALS1P09382 135 aaKnown RBP11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 BLVRBP30043 206 aaPredicted RBP11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 ALDH3A2P51648 485 aa11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 CRIP2P52943 208 aaPredicted RBP11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 PITPNAQ00169 270 aa11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 TMEM267Q0VDI3 215 aaPredicted RBP11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 RIPK1Q13546 671 aa11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 MORN2Q502X0 79 aa11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 FAM53AQ6NSI3 398 aaPredicted RBP11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 NPBQ8NG41 125 aa11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 RHOXF1Q8NHV9 184 aa11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 RGP1Q92546 391 aaPredicted RBP11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 FLYWCH2Q96CP2 140 aaKnown RBP11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 ABHD14AQ9BUJ0 271 aa11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 ELOVL1Q9BW60 279 aa11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 ANKRD60Q9BZ19 345 aa11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 TOLLIPQ9H0E2 274 aa11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 OR2S2Q9NQN1 319 aa11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 MRPS18AQ9NVS2 196 aaKnown RBP11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 CKLFQ9UBR5 152 aa11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 FOXA2Q9Y261 457 aaPredicted RBP11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 RPL36Q9Y3U8 105 aaKnown RBP11.42□□□□□ -0.58
CCDC88B-201ENST00000301897 VEGFCP49767 419 aa11.41□□□□□ -0.58
CCDC88B-201ENST00000301897 GTF2A1P52655 376 aaPredicted RBP11.41□□□□□ -0.58
CCDC88B-201ENST00000301897 SLURP1P55000 103 aa11.41□□□□□ -0.58
CCDC88B-201ENST00000301897 ZNF660Q6AZW8 331 aaPredicted RBP11.41□□□□□ -0.58
CCDC88B-201ENST00000301897 RAB12Q6IQ22 244 aa11.41□□□□□ -0.58
CCDC88B-201ENST00000301897 TMPRSS11AQ6ZMR5 421 aa11.41□□□□□ -0.58
CCDC88B-201ENST00000301897 OR4K15Q8NH41 348 aa11.41□□□□□ -0.58
CCDC88B-201ENST00000301897 OR1L1Q8NH94 360 aa11.41□□□□□ -0.58
CCDC88B-201ENST00000301897 ARPC1AQ92747 370 aa11.41□□□□□ -0.58
CCDC88B-201ENST00000301897 ZNF184Q99676 751 aaPredicted RBP11.41□□□□□ -0.58
CCDC88B-201ENST00000301897 AMBNQ9NP70 447 aa11.41□□□□□ -0.58
CCDC88B-201ENST00000301897 JPT1Q9UK76 154 aa11.41□□□□□ -0.58
CCDC88B-201ENST00000301897 RNF150Q9ULK6 438 aa11.41□□□□□ -0.58
CCDC88B-201ENST00000301897 LRRC42Q9Y546 428 aa11.41□□□□□ -0.58
CCDC88B-201ENST00000301897 TNCP24821 2201 aa11.41□□□□□ -0.58
CCDC88B-201ENST00000301897 DNAH1Q9P2D7 4330 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 MAGEA13PA6NCF6 341 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 TRIM64CA6NLI5 447 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 A8MZ25 164 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 HSPA12AO43301 675 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 CIB2O75838 187 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 SC5DO75845 299 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 NDUFA3O95167 84 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 RCC1P18754 421 aaPredicted RBP11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 CD40LGP29965 261 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 HTD2P86397 168 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 LY6G6FQ5SQ64 297 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 ZFAND6Q6FIF0 208 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms