RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 NPPCP23582 126 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 NTSR1P30989 418 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 ADMP35318 185 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 LINC00310P59036 64 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 BAXQ07812 192 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 EIF3IQ13347 325 aaKnown RBP11.53□□□□□ -0.56
SKA3-201ENST00000298260 SPANXN5Q5MJ07 72 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 ZNF468Q5VIY5 522 aaPredicted RBP11.53□□□□□ -0.56
SKA3-201ENST00000298260 ZNF114Q8NC26 417 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 OR4C12Q96R67 309 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 SPIN2AQ99865 258 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 SPIN2BQ9BPZ2 258 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 TMEM204Q9BSN7 226 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 ALKBH4Q9NXW9 302 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 ERRFI1Q9UJM3 462 aaPredicted RBP11.53□□□□□ -0.56
SKA3-201ENST00000298260 M0QZK8 103 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 GGCTO75223 188 aaKnown RBP11.53□□□□□ -0.56
SKA3-201ENST00000298260 NDUFB8O95169 186 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 VDAC1P21796 283 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 HIST1H3AP68431 136 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 DAZAP2Q15038 168 aaPredicted RBP11.53□□□□□ -0.56
SKA3-201ENST00000298260 HLA-BQ31612 363 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 ACOT6Q3I5F7 207 aaPredicted RBP11.53□□□□□ -0.56
SKA3-201ENST00000298260 ZNF525Q8N782 197 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 MBD3L1Q8WWY6 194 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 PP6455Q8WZ26 134 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 ZNF501Q96CX3 271 aaPredicted RBP11.53□□□□□ -0.56
SKA3-201ENST00000298260 TUBG2Q9NRH3 451 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 TMEM106BQ9NUM4 274 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 KLRF1Q9NZS2 232 aa11.53□□□□□ -0.56
SKA3-201ENST00000298260 SLC22A20A6NK97 555 aa11.52□□□□□ -0.56
SKA3-201ENST00000298260 PAGE4O60829 102 aa11.52□□□□□ -0.56
SKA3-201ENST00000298260 UMODP07911 640 aa11.52□□□□□ -0.56
SKA3-201ENST00000298260 PSG2P11465 335 aa11.52□□□□□ -0.56
SKA3-201ENST00000298260 UBE2G2P60604 165 aa11.52□□□□□ -0.56
SKA3-201ENST00000298260 GRB2P62993 217 aaKnown RBP11.52□□□□□ -0.56
SKA3-201ENST00000298260 NUFIP2Q7Z417 695 aaKnown RBP11.52□□□□□ -0.56
SKA3-201ENST00000298260 OSR2Q8N2R0 312 aa11.52□□□□□ -0.56
SKA3-201ENST00000298260 ZNF709Q8N972 641 aa11.52□□□□□ -0.56
SKA3-201ENST00000298260 OR1N1Q8NGS0 311 aa11.52□□□□□ -0.56
SKA3-201ENST00000298260 CMTM2Q8TAZ6 248 aa11.52□□□□□ -0.56
SKA3-201ENST00000298260 BORCS8Q96FH0 119 aa11.52□□□□□ -0.56
SKA3-201ENST00000298260 MRGPRX1Q96LB2 322 aa11.52□□□□□ -0.56
SKA3-201ENST00000298260 COLQQ9Y215 455 aaPredicted RBP11.52□□□□□ -0.56
SKA3-201ENST00000298260 EML6Q6ZMW3 1958 aa11.52□□□□□ -0.57
SKA3-201ENST00000298260 BDP1A6H8Y1 2624 aa11.52□□□□□ -0.57
SKA3-201ENST00000298260 YPEL1O60688 119 aa11.52□□□□□ -0.57
SKA3-201ENST00000298260 RPL15P61313 204 aaKnown RBP11.52□□□□□ -0.57
SKA3-201ENST00000298260 COTL1Q14019 142 aa11.52□□□□□ -0.57
SKA3-201ENST00000298260 YPEL2Q96QA6 119 aa11.52□□□□□ -0.57
SKA3-201ENST00000298260 CACNG5Q9UF02 275 aa11.52□□□□□ -0.57
SKA3-201ENST00000298260 TRAV39A0A0B4J263 110 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 KIR2DS5A0A0G2JLQ3 304 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 A0A0G2JNG1 304 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 ANKUB1A6NFN9 424 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 KIR2DS3K7RE56 304 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 TNFSF13O75888 250 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 IGLV3-1P01715 115 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 CBLN1P23435 193 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 KIR2DS5Q14953 304 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 ACSM6Q6P461 480 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 OR5P3Q8WZ94 311 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 EXTL1Q92935 676 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 CIB3Q96Q77 187 aaPredicted RBP11.51□□□□□ -0.57
SKA3-201ENST00000298260 P2RX4Q99571 388 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 SERF1AO75920 110 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 PTTG1IPP53801 180 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 CARD18P57730 90 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 MALLQ13021 153 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 VAMP8Q9BV40 100 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 PSENENQ9NZ42 101 aa11.51□□□□□ -0.57
SKA3-201ENST00000298260 IGKV1-6A0A0C4DH72 117 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 SH2D1BO14796 132 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 ZNF16P17020 682 aaPredicted RBP11.5□□□□□ -0.57
SKA3-201ENST00000298260 MPLP40238 635 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 THBS3P49746 956 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 FAM69BQ5VUD6 431 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 CISD2Q8N5K1 135 aaKnown RBP11.5□□□□□ -0.57
SKA3-201ENST00000298260 DEFB119Q8N690 84 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 RLN3Q8WXF3 142 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 ZFP30Q9Y2G7 519 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 PIGCQ92535 297 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 RNF24Q9Y225 148 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 KIAA1324LA8MWY0 1029 aaPredicted RBP11.5□□□□□ -0.57
SKA3-201ENST00000298260 PDCD6O75340 191 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 NAPSAO96009 420 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 KRTDAPP60985 99 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 C17orf67Q0P5P2 114 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 TMEM92Q6UXU6 159 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 ATOH7Q8N100 152 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 ST8SIA1Q92185 356 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 MRGPRX4Q96LA9 322 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 CCDC74BQ96LY2 380 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 UCN2Q96RP3 112 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 OR51B6Q9H340 312 aa11.5□□□□□ -0.57
SKA3-201ENST00000298260 CACNA1DQ01668 2161 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 FAM186AA6NE01 2351 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 C20orf202A1L168 122 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 C2CD4DB7Z1M9 353 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 MYF5P13349 255 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 153.3 ms