RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 KLF3P57682 345 aaPredicted RBP9.66□□□□□ -0.86
CUX1-202ENST00000292538 ZNF146Q15072 292 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 TIMM23BQ5SRD1 257 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 LILRB1Q8NHL6 650 aaPredicted RBP9.66□□□□□ -0.86
CUX1-202ENST00000292538 RNF141Q8WVD5 230 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 ARL11Q969Q4 196 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 GALMQ96C23 342 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 OR2D2Q9H210 308 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 TUBD1Q9UJT1 453 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 AMDHD2Q9Y303 409 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 NSG2Q9Y328 171 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 SPTAN1Q13813 2472 aaKnown RBP9.66□□□□□ -0.86
CUX1-202ENST00000292538 A0A0G2JNJ9 132 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 TMEM210A6NLX4 147 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 C1QL1O75973 258 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 PRH1P02810 166 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 SELLP14151 372 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 F2RP25116 425 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 TESK1Q15569 626 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 H1FOOQ8IZA3 346 aaPredicted RBP9.66□□□□□ -0.86
CUX1-202ENST00000292538 TREM1Q9NP99 234 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 Q9UFV3 132 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 SPEF1Q9Y4P9 236 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 A0A0G2JRQ6 117 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 TMEM30CPA0ZSE6 113 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 C12orf77C9JDV5 145 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 GFRA3O60609 400 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 RBMXL2O75526 392 aaKnown RBP9.66□□□□□ -0.86
CUX1-202ENST00000292538 HBZP02008 142 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 KCNJ3P48549 501 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 FHITP49789 147 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 CCL8P80075 99 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 SRSF3P84103 164 aaKnown RBP9.66□□□□□ -0.86
CUX1-202ENST00000292538 ZNF616Q08AN1 781 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 ZNF816Q0VGE8 651 aaPredicted RBP9.66□□□□□ -0.86
CUX1-202ENST00000292538 TBR1Q16650 682 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 SMIM21Q3B7S5 101 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 AKIRIN2Q53H80 203 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 KRTCAP3Q53RY4 240 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 BPIFCQ8NFQ6 507 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 SUN5Q8TC36 379 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 ITLN1Q8WWA0 313 aa9.66□□□□□ -0.86
CUX1-202ENST00000292538 COL12A1Q99715 3063 aa9.65□□□□□ -0.86
CUX1-202ENST00000292538 TUBAL3A6NHL2 446 aa9.65□□□□□ -0.86
CUX1-202ENST00000292538 A8MXE2 369 aa9.65□□□□□ -0.86
CUX1-202ENST00000292538 TSPAN4O14817 238 aa9.65□□□□□ -0.86
CUX1-202ENST00000292538 IAPPP10997 89 aa9.65□□□□□ -0.86
CUX1-202ENST00000292538 PRDX2P32119 198 aa9.65□□□□□ -0.86
CUX1-202ENST00000292538 TGIF2LYQ8IUE0 185 aa9.65□□□□□ -0.86
CUX1-202ENST00000292538 OR13A1Q8NGR1 328 aa9.65□□□□□ -0.86
CUX1-202ENST00000292538 ABHD14BQ96IU4 210 aa9.65□□□□□ -0.86
CUX1-202ENST00000292538 SH3BGRL3Q9H299 93 aa9.65□□□□□ -0.86
CUX1-202ENST00000292538 FAM96BQ9Y3D0 163 aa9.65□□□□□ -0.86
CUX1-202ENST00000292538 CHST1O43916 411 aa9.65□□□□□ -0.87
CUX1-202ENST00000292538 KRASP01116 189 aa9.65□□□□□ -0.87
CUX1-202ENST00000292538 SELENOVP59797 346 aa9.65□□□□□ -0.87
CUX1-202ENST00000292538 SWI5Q1ZZU3 235 aa9.65□□□□□ -0.87
CUX1-202ENST00000292538 FAM185AQ8N0U4 392 aa9.65□□□□□ -0.87
CUX1-202ENST00000292538 CD177Q8N6Q3 437 aa9.65□□□□□ -0.87
CUX1-202ENST00000292538 LEAP2Q969E1 77 aa9.65□□□□□ -0.87
CUX1-202ENST00000292538 PHYHIPLQ96FC7 376 aa9.65□□□□□ -0.87
CUX1-202ENST00000292538 MRPL37Q9BZE1 423 aaKnown RBP9.65□□□□□ -0.87
CUX1-202ENST00000292538 WFDC1Q9HC57 220 aa9.65□□□□□ -0.87
CUX1-202ENST00000292538 ZDHHC8Q9ULC8 765 aa9.65□□□□□ -0.87
CUX1-202ENST00000292538 RAXQ9Y2V3 346 aa9.65□□□□□ -0.87
CUX1-202ENST00000292538 TRGV8A0A0C4DH27 118 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 ABCD4O14678 606 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 CDS2O95674 445 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 KITLGP21583 273 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 MDH2P40926 338 aaKnown RBP9.64□□□□□ -0.87
CUX1-202ENST00000292538 RPS16P62249 146 aaKnown RBP9.64□□□□□ -0.87
CUX1-202ENST00000292538 ADAM5Q6NVV9 412 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 Q8NA96 180 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 MARC2Q969Z3 335 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 COQ2Q96H96 371 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 ST8SIA5O15466 376 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 CYB5R3P00387 301 aaPredicted RBP9.64□□□□□ -0.87
CUX1-202ENST00000292538 PVALBP20472 110 aaPredicted RBP9.64□□□□□ -0.87
CUX1-202ENST00000292538 CD80P33681 288 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 TIMP3P35625 211 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 PXDC1Q5TGL8 231 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 DRAM1Q8N682 238 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 SFXN3Q9BWM7 321 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 GNG12Q9UBI6 72 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 CACNG5Q9UF02 275 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 PSG11Q9UQ72 335 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 WIPI2Q9Y4P8 454 aa9.64□□□□□ -0.87
CUX1-202ENST00000292538 A0A1W2PPE3 182 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 HEXAP06865 529 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 VDAC1P21796 283 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 SRPXP78539 464 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 MBNL2Q5VZF2 373 aaKnown RBP9.63□□□□□ -0.87
CUX1-202ENST00000292538 DUX4L9Q6RFH8 374 aaPredicted RBP9.63□□□□□ -0.87
CUX1-202ENST00000292538 Q6ZS49 121 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 OR2C3Q8N628 320 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 DMBX1Q8NFW5 382 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 GPR146Q96CH1 333 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 DCAF16Q9NXF7 216 aa9.63□□□□□ -0.87
CUX1-202ENST00000292538 SPTBN1Q01082 2364 aaKnown RBP9.63□□□□□ -0.87
CUX1-202ENST00000292538 USF3Q68DE3 2245 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms