RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 ZNF774Q6NX45 483 aa12.27□□□□□ -0.44
CCDC88A-201ENST00000263630 PTP4A1Q93096 173 aa12.27□□□□□ -0.44
CCDC88A-201ENST00000263630 RNF122Q9H9V4 155 aa12.27□□□□□ -0.44
CCDC88A-201ENST00000263630 NEU3Q9UQ49 428 aa12.27□□□□□ -0.44
CCDC88A-201ENST00000263630 GLULP15104 373 aa12.27□□□□□ -0.44
CCDC88A-201ENST00000263630 NUTF2P61970 127 aaKnown RBP12.27□□□□□ -0.44
CCDC88A-201ENST00000263630 DEFB103AP81534 67 aa12.27□□□□□ -0.44
CCDC88A-201ENST00000263630 KLF9Q13886 244 aaPredicted RBP12.27□□□□□ -0.44
CCDC88A-201ENST00000263630 OR10S1Q8NGN2 331 aa12.27□□□□□ -0.44
CCDC88A-201ENST00000263630 SSPNQ14714 243 aa12.27□□□□□ -0.44
CCDC88A-201ENST00000263630 AGERQ15109 404 aa12.27□□□□□ -0.44
CCDC88A-201ENST00000263630 SOCS7O14512 581 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 PLAUP00749 431 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 PRSS12P56730 875 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 OLIG3Q7RTU3 272 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 TRAV21A0A0B4J279 112 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 GMLQ99445 158 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 TRAF4Q9BUZ4 470 aaPredicted RBP12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 LRRC37A3O60309 1634 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 CA11O75493 328 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 DOCK7Q96N67 2140 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 KCNK7Q9Y2U2 307 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 CEACAM18A8MTB9 384 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 ZNF32P17041 273 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 CX3CL1P78423 397 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 SAPCD1Q5SSQ6 148 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 FAM27D1Q5T7N8 215 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 TMEM45BQ96B21 275 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 ZNF714Q96N38 554 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 IGHV3OR16-12A0A075B7B8 117 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 GALNSP34059 522 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 NUBP1P53384 320 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 NXPH1P58417 271 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 KIRREL2Q6UWL6 708 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 ZNF576Q9H609 170 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 IL20Q9NYY1 176 aa12.27□□□□□ -0.45
CCDC88A-201ENST00000263630 RPS4XP62701 263 aaKnown RBP12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 OR8G5Q8NG78 346 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 RCC2Q9P258 522 aaKnown RBP12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 OR11H12B2RN74 326 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 MMDQ15546 238 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 SAMD13Q5VXD3 122 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 OR11H1Q8NG94 326 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 OR11H2Q8NH07 326 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 C7orf66A4D0T2 115 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 H3BMH7 237 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 RPS27P42677 84 aaKnown RBP12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 ACVR1Q04771 509 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 FZD5Q13467 585 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 SPNS2Q8IVW8 549 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 SCN4AP35499 1836 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 ANKRD20A5PA0PJZ0 165 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 FAM109BQ6ICB4 259 aaPredicted RBP12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 MAVSQ7Z434 540 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 MYO7BQ6PIF6 2116 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 A0A1B0GV90 55 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 SFTPCP11686 197 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 K7N7A8 449 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 CCL26Q9Y258 94 aa12.26□□□□□ -0.45
CCDC88A-201ENST00000263630 SPNP16150 400 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 WSB2Q9NYS7 404 aaPredicted RBP12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 IGKV3OR2-268A0A0C4DH90 116 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 LILRA5A6NI73 299 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 NKX2-8O15522 239 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 SEC11BP0C7V7 166 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 ZNF345Q14585 488 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 MS4A5Q9H3V2 200 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 A0A1B0GWB2 263 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 LEUTXA8MZ59 168 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 PPYP01298 95 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 PSG6Q00889 435 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 NXT2Q9NPJ8 142 aaKnown RBP12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 TRAV30A0A087WSZ9 112 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 BCL2P10415 239 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 SRD5A2P31213 254 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 NAAAQ02083 359 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 PRICKLE4Q2TBC4 344 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 FAM106AQ4KMX7 169 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 OR1P1Q8NH06 330 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 KCNE3Q9Y6H6 103 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 MALP21145 153 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 ZNF793Q6ZN11 406 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 RNF7Q9UBF6 113 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 ZNF385CQ66K41 422 aaPredicted RBP12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 MRGPRFQ96AM1 343 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 MRPL18Q9H0U6 180 aaKnown RBP12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 K7ESM1 405 aa12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 EPHA8P29322 1005 aaPredicted RBP12.25□□□□□ -0.45
CCDC88A-201ENST00000263630 DAOP14920 347 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 EWSR1Q01844 656 aaKnown RBP eCLIP12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 CCSMST1Q4G0I0 132 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 OTPQ5XKR4 325 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 SMOC1Q9H4F8 434 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 CA1P00915 261 aaPredicted RBP12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 FSCN3Q9NQT6 498 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 TMEM170BQ5T4T1 132 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 CLEC2AQ6UVW9 174 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 LHFPL5Q8TAF8 219 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 PRSS27Q9BQR3 290 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 ANAPC13Q9BS18 74 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms