RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 PPP1CCP36873 323 aaKnown RBP11.8□□□□□ -0.52
SF3A1-201ENST00000215793 MRPL54Q6P161 138 aaKnown RBP11.8□□□□□ -0.52
SF3A1-201ENST00000215793 FAM214BQ7L5A3 538 aa11.8□□□□□ -0.52
SF3A1-201ENST00000215793 OR1L6Q8NGR2 347 aa11.8□□□□□ -0.52
SF3A1-201ENST00000215793 NPVFQ9HCQ7 196 aa11.8□□□□□ -0.52
SF3A1-201ENST00000215793 ATG2BQ96BY7 2078 aa11.8□□□□□ -0.52
SF3A1-201ENST00000215793 IGKV1-8A0A0C4DH67 115 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 SMIM6P0DI80 62 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 ZNF250P15622 560 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 KCNMB1Q16558 191 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 ZNF880Q6PDB4 577 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 FAM222BQ8WU58 562 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 SNRNP40Q96DI7 357 aaKnown RBP11.79□□□□□ -0.52
SF3A1-201ENST00000215793 PAPPAQ13219 1627 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 K7N7A8 449 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 GAPDHP04406 335 aaKnown RBP11.79□□□□□ -0.52
SF3A1-201ENST00000215793 PAFAH1B2P68402 229 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 NCMAPQ5T1S8 102 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 SCGB1D4Q6XE38 83 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 HDHD3Q9BSH5 251 aaPredicted RBP11.79□□□□□ -0.52
SF3A1-201ENST00000215793 TRAF4Q9BUZ4 470 aaPredicted RBP11.79□□□□□ -0.52
SF3A1-201ENST00000215793 IL19Q9UHD0 177 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 KCNK7Q9Y2U2 307 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 CLDN14O95500 239 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 PRR7Q8TB68 274 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 DYRK2Q92630 601 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 UBTD1Q9HAC8 227 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 PITPNC1Q9UKF7 332 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 TRBV5-5A0A0J9YX44 114 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 FAM90A10PA6NDY2 464 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 FAM90A18PA6NE21 464 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 FAM90A16PA6NEW6 464 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 FAM90A20PA6NIJ5 464 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 FAM90A8PA6NJQ4 464 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 FAM90A7PA6NKC0 464 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 FAM90A22PA8MWA6 464 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 FAM90A12PA8MX19 464 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 FAM90A5PA8MXJ8 464 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 FAM90A23PA8MXZ1 464 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 MPDU1O75352 247 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 FAM90A15PP0C7V4 464 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 FAM90A13PP0C7W8 464 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 FAM90A14PP0C7W9 464 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 FAM90A24PP0C7X0 464 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 CD1BP29016 333 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 LBHQ53QV2 105 aaPredicted RBP11.79□□□□□ -0.52
SF3A1-201ENST00000215793 TMEM171Q8WVE6 324 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 OR2V2Q96R30 315 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 FUT9Q9Y231 359 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 OR51B2Q9Y5P1 312 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 ZNF318Q5VUA4 2279 aa11.79□□□□□ -0.52
SF3A1-201ENST00000215793 UNC13CQ8NB66 2214 aa11.78□□□□□ -0.52
SF3A1-201ENST00000215793 SULT1A2P50226 295 aa11.78□□□□□ -0.52
SF3A1-201ENST00000215793 COL10A1Q03692 680 aa11.78□□□□□ -0.52
SF3A1-201ENST00000215793 SLC16A13Q7RTY0 426 aa11.78□□□□□ -0.52
SF3A1-201ENST00000215793 TXNDC17Q9BRA2 123 aa11.78□□□□□ -0.52
SF3A1-201ENST00000215793 SNURFLB1AK76 121 aa11.78□□□□□ -0.52
SF3A1-201ENST00000215793 HLA-DQB1P01920 261 aa11.78□□□□□ -0.52
SF3A1-201ENST00000215793 UCP2P55851 309 aa11.78□□□□□ -0.52
SF3A1-201ENST00000215793 LRRC75AQ8NAA5 344 aa11.78□□□□□ -0.52
SF3A1-201ENST00000215793 ADAMTS17Q8TE56 1095 aa11.78□□□□□ -0.52
SF3A1-201ENST00000215793 HSPB8Q9UJY1 196 aa11.78□□□□□ -0.52
SF3A1-201ENST00000215793 MC5RP33032 325 aa11.78□□□□□ -0.52
SF3A1-201ENST00000215793 OR1K1Q8NGR3 316 aa11.78□□□□□ -0.52
SF3A1-201ENST00000215793 H0Y980 276 aa11.77□□□□□ -0.52
SF3A1-201ENST00000215793 ERVFRD-1P60508 538 aa11.77□□□□□ -0.52
SF3A1-201ENST00000215793 KRTCAP3Q53RY4 240 aa11.77□□□□□ -0.52
SF3A1-201ENST00000215793 HYPMO75409 117 aa11.77□□□□□ -0.52
SF3A1-201ENST00000215793 ISG15P05161 165 aa11.77□□□□□ -0.52
SF3A1-201ENST00000215793 GPR6P46095 362 aaPredicted RBP11.77□□□□□ -0.52
SF3A1-201ENST00000215793 ZFP36L2P47974 494 aaKnown RBP11.77□□□□□ -0.52
SF3A1-201ENST00000215793 CD81P60033 236 aa11.77□□□□□ -0.52
SF3A1-201ENST00000215793 SELENOTP62341 195 aa11.77□□□□□ -0.52
SF3A1-201ENST00000215793 C1orf185Q5T7R7 199 aa11.77□□□□□ -0.52
SF3A1-201ENST00000215793 TMEM251Q8N6I4 163 aa11.77□□□□□ -0.52
SF3A1-201ENST00000215793 OR2D3Q8NGH3 330 aa11.77□□□□□ -0.52
SF3A1-201ENST00000215793 SCN3AQ9NY46 2000 aa11.77□□□□□ -0.53
SF3A1-201ENST00000215793 IGHV3OR15-7A0A075B7D8 119 aa11.77□□□□□ -0.53
SF3A1-201ENST00000215793 AHRRA9YTQ3 701 aa11.77□□□□□ -0.53
SF3A1-201ENST00000215793 BCL2P10415 239 aa11.77□□□□□ -0.53
SF3A1-201ENST00000215793 HOXB1P14653 301 aaPredicted RBP11.77□□□□□ -0.53
SF3A1-201ENST00000215793 ZNF343Q6P1L6 599 aa11.77□□□□□ -0.53
SF3A1-201ENST00000215793 GCSAMQ8N6F7 178 aa11.77□□□□□ -0.53
SF3A1-201ENST00000215793 ABHD14BQ96IU4 210 aa11.77□□□□□ -0.53
SF3A1-201ENST00000215793 GHITMQ9H3K2 345 aa11.77□□□□□ -0.53
SF3A1-201ENST00000215793 A0A087X0M5 115 aa11.77□□□□□ -0.53
SF3A1-201ENST00000215793 A0A1B0GX30 115 aa11.77□□□□□ -0.53
SF3A1-201ENST00000215793 CCL21O00585 134 aa11.77□□□□□ -0.53
SF3A1-201ENST00000215793 IER3P46695 156 aa11.77□□□□□ -0.53
SF3A1-201ENST00000215793 C1orf100Q5SVJ3 147 aa11.77□□□□□ -0.53
SF3A1-201ENST00000215793 LDLRAD3Q86YD5 345 aa11.77□□□□□ -0.53
SF3A1-201ENST00000215793 ZNF488Q96MN9 340 aa11.77□□□□□ -0.53
SF3A1-201ENST00000215793 ZNF714Q96N38 554 aa11.77□□□□□ -0.53
SF3A1-201ENST00000215793 KCNK17Q96T54 332 aa11.77□□□□□ -0.53
SF3A1-201ENST00000215793 M0QZK8 103 aa11.76□□□□□ -0.53
SF3A1-201ENST00000215793 GGCTO75223 188 aaKnown RBP11.76□□□□□ -0.53
SF3A1-201ENST00000215793 LRRC75BQ2VPJ9 315 aa11.76□□□□□ -0.53
SF3A1-201ENST00000215793 TMEM252Q8N6L7 170 aa11.76□□□□□ -0.53
SF3A1-201ENST00000215793 STARD4Q96DR4 205 aa11.76□□□□□ -0.53
SF3A1-201ENST00000215793 PAXXQ9BUH6 204 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms