RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 C5orf17Q8NAS9 161 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 OR4X1Q8NH49 305 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 LPAR2Q9HBW0 351 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 RAB29O14966 203 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 DHHO43323 396 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 REG1AP05451 166 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 FCGR3AP08637 254 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 OR10W1Q8NGF6 305 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 BAHD1Q8TBE0 780 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-220ENST00000641603 HES4Q9HCC6 221 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 WNT6Q9Y6F9 365 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 ALG1L2C9J202 215 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 ETHE1O95571 254 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 AMBPP02760 352 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 KIR3DL2P43630 455 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 MRPL58Q14197 206 aaKnown RBP4.1□□□□□ -1.75
SCN1A-220ENST00000641603 ZIC1Q15915 447 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 CLDND2Q8NHS1 167 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 FBXO17Q96EF6 278 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 SARGQ9BW04 601 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 STRADBQ9C0K7 418 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 MYO18AQ92614 2054 aaKnown RBP4.1□□□□□ -1.75
SCN1A-220ENST00000641603 RAMP1O60894 148 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 SLC25A5P05141 298 aaKnown RBP4.09□□□□□ -1.75
SCN1A-220ENST00000641603 CFPP27918 469 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 PSMB2P49721 201 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 MYBPHQ13203 477 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 PLAC9Q5JTB6 97 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 TBC1D26Q86UD7 250 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 AGBL5Q8NDL9 886 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 TRBV23OR9-2A0A075B6M9 112 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 TMEM88BA6NKF7 163 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 ZNF324O75467 553 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-220ENST00000641603 NUBP1P53384 320 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 TMEM116Q8NCL8 245 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 ABHD5Q8WTS1 349 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 DNAJA3Q96EY1 480 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 OSTCQ9NRP0 149 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 DUSP13Q9UII6 198 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 A0A0A6YYC8 382 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-220ENST00000641603 I3L1I5 382 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-220ENST00000641603 ALOX12BO75342 701 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 ATP5LO75964 103 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 ONECUT2O95948 504 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 IGHV2-5P01817 119 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 PNLIPP16233 465 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 GPR183P32249 361 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 HBBP68871 147 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 ZP4Q12836 540 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 LRRC10Q5BKY1 277 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 FGF17O60258 216 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 CKS1BP61024 79 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 OCIAD2Q56VL3 154 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 SPRYD7Q5W111 196 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 ZFAND6Q6FIF0 208 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 TPPP3Q9BW30 176 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 RHOGP84095 191 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 IBA57Q5T440 356 aaKnown RBP4.09□□□□□ -1.75
SCN1A-220ENST00000641603 OBP2BQ9NPH6 170 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 AP5S1Q9NUS5 200 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 FOXD3Q9UJU5 478 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-220ENST00000641603 CTSSP25774 331 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 AGERQ15109 404 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 ACTL10Q5JWF8 245 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 GPBAR1Q8TDU6 330 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 MGST2Q99735 147 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 CDC42EP2O14613 210 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 CCL23P55773 120 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 FAM71F2Q6NXP2 309 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 SSX8Q7RTT4 187 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 OR4P4Q8NGL7 312 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 RPEQ96AT9 228 aa4.09□□□□□ -1.75
SCN1A-220ENST00000641603 SF3B5Q9BWJ5 86 aaKnown RBP4.09□□□□□ -1.75
SCN1A-220ENST00000641603 A0A0G2JK05 382 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 A0A1B0GX78 115 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 P2RY2P41231 377 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 PAX2Q02962 417 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 C11orf40Q8WZ69 217 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 THOC3Q96J01 351 aaKnown RBP4.09□□□□□ -1.76
SCN1A-220ENST00000641603 DLX1P56177 255 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 SOX8P57073 446 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 MAJINQ3KP22 176 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 ABHD17BQ5VST6 288 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 THSD4Q6ZMP0 1018 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 TCF24Q7RTU0 167 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 PRR18Q8N4B5 295 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 OR2T6Q8NHC8 308 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 MISP3Q96FF7 219 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 IP6K3Q96PC2 410 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 EDDM3BP56851 147 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 COA6Q5JTJ3 125 aaKnown RBP4.09□□□□□ -1.76
SCN1A-220ENST00000641603 OR2M3Q8NG83 312 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 DUSP23Q9BVJ7 150 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 ZNF665Q9H7R5 613 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 NGBQ9NPG2 151 aa4.09□□□□□ -1.76
SCN1A-220ENST00000641603 MYH14Q7Z406 1995 aaKnown RBP4.08□□□□□ -1.76
SCN1A-220ENST00000641603 OR11H12B2RN74 326 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 H3BP45 60 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 J3QW42 95 aa4.08□□□□□ -1.76
SCN1A-220ENST00000641603 KLF4O43474 513 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms