RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 DLX1P56177 255 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 TAGLNQ01995 201 aaKnown RBP4.37□□□□□ -1.71
SCN1A-218ENST00000640036 PHLDA2Q53GA4 152 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 PAPPA-AS1Q5QFB9 102 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 FAM122BQ7Z309 247 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 OR1K1Q8NGR3 316 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF721Q8TF20 911 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 SEC11CQ9BY50 192 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 PUS1Q9Y606 427 aaKnown RBP eCLIP4.37□□□□□ -1.71
SCN1A-218ENST00000640036 MALRD1Q5VYJ5 2156 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 RER1O15258 196 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 GPX5O75715 221 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 ZP3P21754 424 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 CEACAM6P40199 344 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 HIST1H3AP68431 136 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 ATP5G2Q06055 141 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 PDZD11Q5EBL8 140 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 ELP2Q6IA86 826 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 DEGS2Q6QHC5 323 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 ADGRE4PQ86SQ3 457 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 OR13A1Q8NGR1 328 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 MARCH1Q8TCQ1 289 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 IL22RA2Q969J5 263 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 TMEM186Q96B77 213 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 HARBI1Q96MB7 349 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 NAGKQ9UJ70 344 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 ABCA12Q86UK0 2595 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 CBY3A6NI87 242 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 J3QT63 122 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 TTRP02766 147 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 ROM1Q03395 351 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 DEFB113Q30KQ7 82 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF770Q6IQ21 691 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-218ENST00000640036 WIPI2Q9Y4P8 454 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 FCGR3BO75015 233 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 HOXB5P09067 269 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 SPI1P17947 270 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 PSMB1P20618 241 aaKnown RBP4.37□□□□□ -1.71
SCN1A-218ENST00000640036 SLC9A3R2Q15599 337 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF385CQ66K41 422 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-218ENST00000640036 DESI1Q6ICB0 168 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 NRARPQ7Z6K4 114 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 LGI3Q8N145 548 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF485Q8NCK3 441 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 TEAD3Q99594 435 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 PSMG3Q9BT73 122 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-218ENST00000640036 CCL27Q9Y4X3 112 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 TRAV40A0A0B4J280 105 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 SOD1P00441 154 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 CPN1P15169 458 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 TAS2R60P59551 318 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF691Q5VV52 312 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 SAMD13Q5VXD3 122 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 OR8G2PQ6IF36 304 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF429Q86V71 674 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 OR2H1Q9GZK4 316 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF703Q9H7S9 590 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-218ENST00000640036 SPANXCQ9NY87 97 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 BOLA1Q9Y3E2 137 aa4.37□□□□□ -1.71
SCN1A-218ENST00000640036 C5orf52A6NGY3 159 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 OR2C1O95371 312 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF85Q03923 595 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 CR1LQ2VPA4 569 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF600Q6ZNG1 722 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 ZIC4Q8N9L1 334 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 SLC25A33Q9BSK2 321 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 FOCADQ5VW36 1801 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 ANK1P16157 1881 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 FITM1A5D6W6 292 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 FUCA1P04066 466 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 GALR1P47211 349 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 CNN1P51911 297 aaKnown RBP4.36□□□□□ -1.71
SCN1A-218ENST00000640036 ZFP62Q8NB50 900 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-218ENST00000640036 OR51S1Q8NGJ8 323 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 IL17DQ8TAD2 202 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 MARS2Q96GW9 593 aaKnown RBP4.36□□□□□ -1.71
SCN1A-218ENST00000640036 SIGLEC11Q96RL6 698 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 ASIC5Q9NY37 505 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 PSCAO43653 123 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 OR7C2O60412 319 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 PTBP3O95758 552 aaKnown RBP4.36□□□□□ -1.71
SCN1A-218ENST00000640036 MYOD1P15172 320 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 LMO1P25800 156 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 RPL30P62888 115 aaKnown RBP4.36□□□□□ -1.71
SCN1A-218ENST00000640036 ADIPOQQ15848 244 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 Q6ZSR9 355 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 HAPLN4Q86UW8 402 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 OR10C1Q96KK4 312 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF385DQ9H6B1 395 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 CMC2Q9NRP2 79 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 RCC2Q9P258 522 aaKnown RBP4.36□□□□□ -1.71
SCN1A-218ENST00000640036 DPM3Q9P2X0 92 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF835Q9Y2P0 537 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 A0A087WV48 116 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 hCG_38984A0A1B0GV85 526 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 CXorf65A6NEN9 183 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 DEFB108AA8MXU0 73 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 NPIPB6E9PJ23 425 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 J3KTA2 159 aa4.36□□□□□ -1.71
SCN1A-218ENST00000640036 MGST3O14880 152 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms