RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 I3L521 148 aa11.65□□□□□ -0.54
SYNE2-228ENST00000639659 AIPO00170 330 aa11.65□□□□□ -0.54
SYNE2-228ENST00000639659 CSTBP04080 98 aaKnown RBP11.65□□□□□ -0.54
SYNE2-228ENST00000639659 ECSCRQ19T08 205 aa11.65□□□□□ -0.54
SYNE2-228ENST00000639659 LINC00311Q8N616 119 aa11.65□□□□□ -0.54
SYNE2-228ENST00000639659 ACBD7Q8N6N7 88 aa11.65□□□□□ -0.54
SYNE2-228ENST00000639659 ZNF491Q8N8L2 437 aa11.65□□□□□ -0.54
SYNE2-228ENST00000639659 OR5AK2Q8NH90 309 aa11.65□□□□□ -0.54
SYNE2-228ENST00000639659 ARPC1AQ92747 370 aa11.65□□□□□ -0.54
SYNE2-228ENST00000639659 DLX4Q92988 240 aaPredicted RBP11.65□□□□□ -0.54
SYNE2-228ENST00000639659 ISOC1Q96CN7 298 aa11.65□□□□□ -0.54
SYNE2-228ENST00000639659 MRPL48Q96GC5 212 aaKnown RBP11.65□□□□□ -0.54
SYNE2-228ENST00000639659 UBE2E2Q96LR5 201 aa11.65□□□□□ -0.54
SYNE2-228ENST00000639659 S100A13Q99584 98 aa11.65□□□□□ -0.54
SYNE2-228ENST00000639659 GABARAPL3Q9BY60 117 aa11.65□□□□□ -0.54
SYNE2-228ENST00000639659 GEMIN2O14893 280 aaKnown RBP11.64□□□□□ -0.55
SYNE2-228ENST00000639659 TXNL1O43396 289 aa11.64□□□□□ -0.55
SYNE2-228ENST00000639659 IGF1P05019 195 aa11.64□□□□□ -0.55
SYNE2-228ENST00000639659 RPSAP08865 295 aaKnown RBP11.64□□□□□ -0.55
SYNE2-228ENST00000639659 RBM11P57052 281 aaKnown RBP11.64□□□□□ -0.55
SYNE2-228ENST00000639659 HAPLN4Q86UW8 402 aa11.64□□□□□ -0.55
SYNE2-228ENST00000639659 STX19Q8N4C7 294 aa11.64□□□□□ -0.55
SYNE2-228ENST00000639659 PARP16Q8N5Y8 322 aa11.64□□□□□ -0.55
SYNE2-228ENST00000639659 OR52M1Q8NGK5 317 aa11.64□□□□□ -0.55
SYNE2-228ENST00000639659 OR6Q1Q8NGQ2 317 aa11.64□□□□□ -0.55
SYNE2-228ENST00000639659 OR52N1Q8NH53 320 aa11.64□□□□□ -0.55
SYNE2-228ENST00000639659 CASTOR1Q8WTX7 329 aa11.64□□□□□ -0.55
SYNE2-228ENST00000639659 ST6GALNAC6Q969X2 333 aa11.64□□□□□ -0.55
SYNE2-228ENST00000639659 CITED4Q96RK1 184 aa11.64□□□□□ -0.55
SYNE2-228ENST00000639659 METTL9Q9H1A3 318 aa11.64□□□□□ -0.55
SYNE2-228ENST00000639659 GHITMQ9H3K2 345 aa11.64□□□□□ -0.55
SYNE2-228ENST00000639659 ISG20L2Q9H9L3 353 aaKnown RBP11.64□□□□□ -0.55
SYNE2-228ENST00000639659 AASSQ9UDR5 926 aa11.64□□□□□ -0.55
SYNE2-228ENST00000639659 TRAPPC2LQ9UL33 140 aa11.64□□□□□ -0.55
SYNE2-228ENST00000639659 OAZ3Q9UMX2 235 aa11.64□□□□□ -0.55
SYNE2-228ENST00000639659 A3GALT2U3KPV4 340 aa11.64□□□□□ -0.55
SYNE2-228ENST00000639659 TRAV41A0A0B4J266 112 aa11.63□□□□□ -0.55
SYNE2-228ENST00000639659 TMEM212A6NML5 194 aa11.63□□□□□ -0.55
SYNE2-228ENST00000639659 E9PI62 339 aa11.63□□□□□ -0.55
SYNE2-228ENST00000639659 CNTFRP26992 372 aa11.63□□□□□ -0.55
SYNE2-228ENST00000639659 PAX5Q02548 391 aa11.63□□□□□ -0.55
SYNE2-228ENST00000639659 LSAMPQ13449 338 aa11.63□□□□□ -0.55
SYNE2-228ENST00000639659 SLC25A48Q6ZT89 311 aaKnown RBP11.63□□□□□ -0.55
SYNE2-228ENST00000639659 OR4K15Q8NH41 348 aa11.63□□□□□ -0.55
SYNE2-228ENST00000639659 MYOZ3Q8TDC0 251 aa11.63□□□□□ -0.55
SYNE2-228ENST00000639659 ABHD5Q8WTS1 349 aa11.63□□□□□ -0.55
SYNE2-228ENST00000639659 AP4S1Q9Y587 144 aa11.63□□□□□ -0.55
SYNE2-228ENST00000639659 A0A1W2PN81 502 aa11.62□□□□□ -0.55
SYNE2-228ENST00000639659 C12orf77C9JDV5 145 aa11.62□□□□□ -0.55
SYNE2-228ENST00000639659 LINC01619G3V211 115 aa11.62□□□□□ -0.55
SYNE2-228ENST00000639659 J3QRE1 110 aa11.62□□□□□ -0.55
SYNE2-228ENST00000639659 SPINT2O43291 252 aa11.62□□□□□ -0.55
SYNE2-228ENST00000639659 BLVRBP30043 206 aaPredicted RBP11.62□□□□□ -0.55
SYNE2-228ENST00000639659 CHRNA7P36544 502 aa11.62□□□□□ -0.55
SYNE2-228ENST00000639659 RAB9AP51151 201 aa11.62□□□□□ -0.55
SYNE2-228ENST00000639659 ACTBP60709 375 aa11.62□□□□□ -0.55
SYNE2-228ENST00000639659 PITPNAQ00169 270 aa11.62□□□□□ -0.55
SYNE2-228ENST00000639659 KIAA0141Q14154 515 aaPredicted RBP11.62□□□□□ -0.55
SYNE2-228ENST00000639659 DDI2Q5TDH0 399 aa11.62□□□□□ -0.55
SYNE2-228ENST00000639659 OR1L1Q8NH94 360 aa11.62□□□□□ -0.55
SYNE2-228ENST00000639659 LGALS12Q96DT0 336 aa11.62□□□□□ -0.55
SYNE2-228ENST00000639659 ZNF251Q9BRH9 671 aa11.62□□□□□ -0.55
SYNE2-228ENST00000639659 RSRP1Q9BUV0 290 aa11.62□□□□□ -0.55
SYNE2-228ENST00000639659 OR51J1Q9H342 316 aa11.62□□□□□ -0.55
SYNE2-228ENST00000639659 IGHV4OR15-8A0A075B7B6 117 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 A0A087WW49 117 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 A0A1W2PP11 408 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 ORC5O43913 435 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 IGHV3-11P01762 117 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 FCGR1AP12314 374 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 PPIFP30405 207 aaKnown RBP11.61□□□□□ -0.55
SYNE2-228ENST00000639659 ZNF134P52741 427 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 GBX2P52951 348 aaPredicted RBP11.61□□□□□ -0.55
SYNE2-228ENST00000639659 PPP3R1P63098 170 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 RUNX1Q01196 453 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 GALEQ14376 348 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 ZIK1Q3SY52 487 aaPredicted RBP11.61□□□□□ -0.55
SYNE2-228ENST00000639659 SLC22A6Q4U2R8 563 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 CT45A1Q5HYN5 189 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 SYT6Q5T7P8 510 aaPredicted RBP11.61□□□□□ -0.55
SYNE2-228ENST00000639659 C8orf31Q8N9H6 132 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 CT45A3Q8NHU0 189 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 SLC7A6OSQ96CW6 309 aaPredicted RBP11.61□□□□□ -0.55
SYNE2-228ENST00000639659 OR4C12Q96R67 309 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 JAM3Q9BX67 310 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 ANKRD60Q9BZ19 345 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 ORC6Q9Y5N6 252 aa11.61□□□□□ -0.55
SYNE2-228ENST00000639659 STARD9Q9P2P6 4700 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 IGHV7-81A0A0B4J1V7 117 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 SNTNA6NMZ2 147 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 LDLRAD4O15165 306 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 IGLV1-40P01703 118 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 HBZP02008 142 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 MT-ND4P03905 459 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 CD2P06729 351 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 IGHV4-30-4P0DP06 118 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 ZNF93P35789 620 aaPredicted RBP11.6□□□□□ -0.55
SYNE2-228ENST00000639659 MPV17LQ2QL34 196 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 C1orf146Q5VVC0 180 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 MEDAGQ5VYS4 303 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms