RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 SLC16A12Q6ZSM3 486 aa12.77□□□□□ -0.37
CLN3-264ENST00000637985 LCNL1Q6ZST4 164 aa12.77□□□□□ -0.37
CLN3-264ENST00000637985 C8orf59Q8N0T1 100 aaPredicted RBP12.77□□□□□ -0.37
CLN3-264ENST00000637985 SUMF2Q8NBJ7 301 aa12.77□□□□□ -0.37
CLN3-264ENST00000637985 RBMXL1Q96E39 390 aaKnown RBP12.77□□□□□ -0.37
CLN3-264ENST00000637985 PGLYRP3Q96LB9 341 aa12.77□□□□□ -0.37
CLN3-264ENST00000637985 DPCDQ9BVM2 203 aaPredicted RBP12.77□□□□□ -0.37
CLN3-264ENST00000637985 J3QR06 171 aa12.76□□□□□ -0.37
CLN3-264ENST00000637985 OR7C1O76099 320 aaPredicted RBP12.76□□□□□ -0.37
CLN3-264ENST00000637985 INSL3P51460 131 aa12.76□□□□□ -0.37
CLN3-264ENST00000637985 RPS11P62280 158 aaKnown RBP eCLIP12.76□□□□□ -0.37
CLN3-264ENST00000637985 SLC35B1P78383 322 aa12.76□□□□□ -0.37
CLN3-264ENST00000637985 GPR176Q14439 515 aa12.76□□□□□ -0.37
CLN3-264ENST00000637985 RBM39Q14498 530 aaKnown RBP12.76□□□□□ -0.37
CLN3-264ENST00000637985 MPV17LQ2QL34 196 aa12.76□□□□□ -0.37
CLN3-264ENST00000637985 OGFRL1Q5TC84 451 aaPredicted RBP12.76□□□□□ -0.37
CLN3-264ENST00000637985 OR13C5Q8NGS8 318 aa12.76□□□□□ -0.37
CLN3-264ENST00000637985 PLPPR1Q8TBJ4 325 aa12.76□□□□□ -0.37
CLN3-264ENST00000637985 ZNF184Q99676 751 aaPredicted RBP12.76□□□□□ -0.37
CLN3-264ENST00000637985 PLCXD1Q9NUJ7 323 aa12.76□□□□□ -0.37
CLN3-264ENST00000637985 LINC00527Q9UJ94 153 aa12.76□□□□□ -0.37
CLN3-264ENST00000637985 MOB4Q9Y3A3 225 aa12.76□□□□□ -0.37
CLN3-264ENST00000637985 SERPINE3A8MV23 424 aa12.75□□□□□ -0.37
CLN3-264ENST00000637985 GEMIN2O14893 280 aaKnown RBP12.75□□□□□ -0.37
CLN3-264ENST00000637985 CASQ2O14958 399 aaPredicted RBP12.75□□□□□ -0.37
CLN3-264ENST00000637985 CD1AP06126 327 aa12.75□□□□□ -0.37
CLN3-264ENST00000637985 FAM106CPP0CH98 169 aa12.75□□□□□ -0.37
CLN3-264ENST00000637985 GTF2F2P13984 249 aa12.75□□□□□ -0.37
CLN3-264ENST00000637985 FSTP19883 344 aa12.75□□□□□ -0.37
CLN3-264ENST00000637985 GZMHP20718 246 aa12.75□□□□□ -0.37
CLN3-264ENST00000637985 SERPINA2P20848 420 aa12.75□□□□□ -0.37
CLN3-264ENST00000637985 UTF1Q5T230 341 aa12.75□□□□□ -0.37
CLN3-264ENST00000637985 THNSL2Q86YJ6 484 aa12.75□□□□□ -0.37
CLN3-264ENST00000637985 CDH26Q8IXH8 852 aa12.75□□□□□ -0.37
CLN3-264ENST00000637985 ZFP41Q8N8Y5 198 aa12.75□□□□□ -0.37
CLN3-264ENST00000637985 MRGPRDQ8TDS7 321 aa12.75□□□□□ -0.37
CLN3-264ENST00000637985 FBLIM1Q8WUP2 373 aa12.75□□□□□ -0.37
CLN3-264ENST00000637985 RPEQ96AT9 228 aa12.75□□□□□ -0.37
CLN3-264ENST00000637985 ORAI1Q96D31 301 aa12.75□□□□□ -0.37
CLN3-264ENST00000637985 PSORS1C1Q9UIG5 152 aa12.75□□□□□ -0.37
CLN3-264ENST00000637985 TRBV5-7A0A0A0MS05 114 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 TMEM30CPA0ZSE6 113 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 FAM90A18PA6NE21 464 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 FAM90A16PA6NEW6 464 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 FAM90A20PA6NIJ5 464 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 FAM90A9PA6NNJ1 464 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 FAM90A12PA8MX19 464 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 FAM90A5PA8MXJ8 464 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 RPLP1P05386 114 aaKnown RBP12.74□□□□□ -0.37
CLN3-264ENST00000637985 GNAO1P09471 354 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 FAM90A15PP0C7V4 464 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 FAM90A13PP0C7W8 464 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 FAM90A14PP0C7W9 464 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 FAM90A24PP0C7X0 464 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 CDX1P47902 265 aaPredicted RBP12.74□□□□□ -0.37
CLN3-264ENST00000637985 MADCAM1Q13477 382 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 FHL3Q13643 280 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 FAM27D1Q5T7N8 215 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 LAIR2Q6ISS4 152 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 TEX38Q6PEX7 206 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 STX19Q8N4C7 294 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 RFESDQ8TAC1 157 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 THRSPQ92748 146 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 TOMM40LQ969M1 308 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 MRPS24Q96EL2 167 aaKnown RBP12.74□□□□□ -0.37
CLN3-264ENST00000637985 VCXQ9H320 206 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 SPACA1Q9HBV2 294 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 PSG11Q9UQ72 335 aa12.74□□□□□ -0.37
CLN3-264ENST00000637985 TRAV8-7A0A075B6U6 113 aa12.73□□□□□ -0.37
CLN3-264ENST00000637985 MYL12BO14950 172 aa12.73□□□□□ -0.37
CLN3-264ENST00000637985 LDLRAD4O15165 306 aa12.73□□□□□ -0.37
CLN3-264ENST00000637985 MYF6P23409 242 aa12.73□□□□□ -0.37
CLN3-264ENST00000637985 SSTR5P35346 364 aa12.73□□□□□ -0.37
CLN3-264ENST00000637985 RAB7AP51149 207 aa12.73□□□□□ -0.37
CLN3-264ENST00000637985 WNT4P56705 351 aa12.73□□□□□ -0.37
CLN3-264ENST00000637985 SLC22A6Q4U2R8 563 aa12.73□□□□□ -0.37
CLN3-264ENST00000637985 ATAD3CQ5T2N8 411 aa12.73□□□□□ -0.37
CLN3-264ENST00000637985 STPG2Q8N412 459 aa12.73□□□□□ -0.37
CLN3-264ENST00000637985 DRAM1Q8N682 238 aa12.73□□□□□ -0.37
CLN3-264ENST00000637985 LEAP2Q969E1 77 aa12.73□□□□□ -0.37
CLN3-264ENST00000637985 OR14A2Q96R54 314 aa12.73□□□□□ -0.37
CLN3-264ENST00000637985 ZNF581Q9P0T4 197 aa12.73□□□□□ -0.37
CLN3-264ENST00000637985 MRPS28Q9Y2Q9 187 aaKnown RBP12.73□□□□□ -0.37
CLN3-264ENST00000637985 MAGEA13PA6NCF6 341 aa12.72□□□□□ -0.37
CLN3-264ENST00000637985 CCRL2O00421 344 aa12.72□□□□□ -0.37
CLN3-264ENST00000637985 CELP19835 753 aa12.72□□□□□ -0.37
CLN3-264ENST00000637985 LTC4SQ16873 150 aa12.72□□□□□ -0.37
CLN3-264ENST00000637985 AHSA2Q719I0 299 aa12.72□□□□□ -0.37
CLN3-264ENST00000637985 OR8H3Q8N146 312 aa12.72□□□□□ -0.37
CLN3-264ENST00000637985 JAGN1Q8N5M9 183 aa12.72□□□□□ -0.37
CLN3-264ENST00000637985 NANOGP1Q8N7R0 232 aa12.72□□□□□ -0.37
CLN3-264ENST00000637985 C5orf56Q8N8D9 126 aa12.72□□□□□ -0.37
CLN3-264ENST00000637985 BPIFB6Q8NFQ5 453 aa12.72□□□□□ -0.37
CLN3-264ENST00000637985 OR52M1Q8NGK5 317 aa12.72□□□□□ -0.37
CLN3-264ENST00000637985 DERL3Q96Q80 235 aa12.72□□□□□ -0.37
CLN3-264ENST00000637985 FKBP14Q9NWM8 211 aa12.72□□□□□ -0.37
CLN3-264ENST00000637985 ERGIC3Q9Y282 383 aa12.72□□□□□ -0.37
CLN3-264ENST00000637985 KIAA1109Q2LD37 5005 aa12.72□□□□□ -0.37
CLN3-264ENST00000637985 TRAV39A0A0B4J263 110 aa12.71□□□□□ -0.37
CLN3-264ENST00000637985 PNMA8CA0A1B0GUJ8 204 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms