RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 CDIPTO14735 213 aa15.52■□□□□ 0.08
CLN3-263ENST00000637871 OR2H2O95918 312 aa15.52■□□□□ 0.08
CLN3-263ENST00000637871 GAPDHP04406 335 aaKnown RBP15.52■□□□□ 0.08
CLN3-263ENST00000637871 MPV17P39210 176 aa15.52■□□□□ 0.08
CLN3-263ENST00000637871 MRGPRGQ86SM5 289 aa15.52■□□□□ 0.08
CLN3-263ENST00000637871 H1FOOQ8IZA3 346 aaPredicted RBP15.52■□□□□ 0.08
CLN3-263ENST00000637871 BATF2Q8N1L9 274 aa15.52■□□□□ 0.08
CLN3-263ENST00000637871 ITLN2Q8WWU7 325 aaPredicted RBP15.52■□□□□ 0.08
CLN3-263ENST00000637871 MUCL1Q96DR8 90 aa15.52■□□□□ 0.08
CLN3-263ENST00000637871 REG4Q9BYZ8 158 aa15.52■□□□□ 0.08
CLN3-263ENST00000637871 PIGMQ9H3S5 423 aa15.52■□□□□ 0.08
CLN3-263ENST00000637871 TAAR3PQ9P1P4 343 aa15.52■□□□□ 0.08
CLN3-263ENST00000637871 UBE2J1Q9Y385 318 aaPredicted RBP15.52■□□□□ 0.08
CLN3-263ENST00000637871 NKX2-6A6NCS4 301 aa15.51■□□□□ 0.07
CLN3-263ENST00000637871 K7EPK0 472 aa15.51■□□□□ 0.07
CLN3-263ENST00000637871 ERVS71-1P61550 626 aa15.51■□□□□ 0.07
CLN3-263ENST00000637871 HERPUD1Q15011 391 aa15.51■□□□□ 0.07
CLN3-263ENST00000637871 BEX5Q5H9J7 111 aa15.51■□□□□ 0.07
CLN3-263ENST00000637871 BVESQ8NE79 360 aa15.51■□□□□ 0.07
CLN3-263ENST00000637871 RRNAD1Q96FB5 475 aaKnown RBP15.51■□□□□ 0.07
CLN3-263ENST00000637871 MBNL3Q9NUK0 354 aaKnown RBP15.51■□□□□ 0.07
CLN3-263ENST00000637871 COQ3Q9NZJ6 369 aa15.51■□□□□ 0.07
CLN3-263ENST00000637871 LRRK2Q5S007 2527 aa15.51■□□□□ 0.07
CLN3-263ENST00000637871 ST8SIA3O43173 380 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 UCP1P25874 307 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 CHRNB4P30926 498 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 FAM90A1Q86YD7 464 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 ZNF695Q8IW36 515 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 OR10Z1Q8NGY1 313 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 RNF141Q8WVD5 230 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 SECTM1Q8WVN6 248 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 ZC4H2Q9NQZ6 224 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 CYTL1Q9NRR1 136 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 H0Y980 276 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 JTBO76095 146 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 HAND1O96004 215 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 GRPP07492 148 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 FGF2P09038 288 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 HKR1P10072 659 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 RPL12P30050 165 aaKnown RBP15.5■□□□□ 0.07
CLN3-263ENST00000637871 P2RY1P47900 373 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 RPS23P62266 143 aaKnown RBP15.5■□□□□ 0.07
CLN3-263ENST00000637871 ALKBH6Q3KRA9 238 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 SP6Q3SY56 376 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 SLC35E4Q6ICL7 350 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 LYZL2Q7Z4W2 148 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 TBC1D26Q86UD7 250 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 OR5D13Q8NGL4 314 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 C1QTNF6Q9BXI9 259 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 KCNIP1Q9NZI2 227 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 TRAPPC2LQ9UL33 140 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 ADGRG4Q8IZF6 3080 aa15.5■□□□□ 0.07
CLN3-263ENST00000637871 FASNP49327 2511 aaKnown RBP15.5■□□□□ 0.07
CLN3-263ENST00000637871 IGKV1-6A0A0C4DH72 117 aa15.49■□□□□ 0.07
CLN3-263ENST00000637871 TMEM30CPA0ZSE6 113 aa15.49■□□□□ 0.07
CLN3-263ENST00000637871 CLEC18AA5D8T8 446 aa15.49■□□□□ 0.07
CLN3-263ENST00000637871 A8MXK9 166 aa15.49■□□□□ 0.07
CLN3-263ENST00000637871 HSPB6O14558 160 aa15.49■□□□□ 0.07
CLN3-263ENST00000637871 FGF16O43320 207 aa15.49■□□□□ 0.07
CLN3-263ENST00000637871 SLC25A6P12236 298 aa15.49■□□□□ 0.07
CLN3-263ENST00000637871 MMP9P14780 707 aa15.49■□□□□ 0.07
CLN3-263ENST00000637871 ZP3P21754 424 aa15.49■□□□□ 0.07
CLN3-263ENST00000637871 CFHR2P36980 270 aa15.49■□□□□ 0.07
CLN3-263ENST00000637871 HMGN3Q15651 99 aa15.49■□□□□ 0.07
CLN3-263ENST00000637871 CLEC18CQ8NCF0 446 aa15.49■□□□□ 0.07
CLN3-263ENST00000637871 CA5BP1Q8WTZ4 195 aa15.49■□□□□ 0.07
CLN3-263ENST00000637871 NUP50Q9UKX7 468 aa15.49■□□□□ 0.07
CLN3-263ENST00000637871 DOPEY1Q5JWR5 2465 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.48■□□□□ 0.07
CLN3-263ENST00000637871 MLNRO43193 412 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 PTBP3O95758 552 aaKnown RBP15.48■□□□□ 0.07
CLN3-263ENST00000637871 CRYAAP02489 173 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 PVALBP20472 110 aaPredicted RBP15.48■□□□□ 0.07
CLN3-263ENST00000637871 VDAC1P21796 283 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 GLRXP35754 106 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 CD200P41217 278 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 PAX5Q02548 391 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 GNMTQ14749 295 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 MSMO1Q15800 293 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 SMIM21Q3B7S5 101 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 TMEM268Q5VZI3 342 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 TRAT1Q6PIZ9 186 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 UQCC3Q6UW78 93 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 ZNF818PQ6ZRF7 136 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 ZBTB34Q8NCN2 500 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 OR10V1Q8NGI7 309 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 OR11L1Q8NGX0 322 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 TP53RKQ96S44 253 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 POMT1Q9Y6A1 747 aa15.48■□□□□ 0.07
CLN3-263ENST00000637871 SPTBN1Q01082 2364 aaKnown RBP15.48■□□□□ 0.07
CLN3-263ENST00000637871 GPR137BO60478 399 aa15.47■□□□□ 0.07
CLN3-263ENST00000637871 IGHV3-13P01766 116 aa15.47■□□□□ 0.07
CLN3-263ENST00000637871 MBPP02686 304 aaPredicted RBP15.47■□□□□ 0.07
CLN3-263ENST00000637871 ZNF250P15622 560 aa15.47■□□□□ 0.07
CLN3-263ENST00000637871 GRNP28799 593 aaKnown RBP15.47■□□□□ 0.07
CLN3-263ENST00000637871 ZNF474Q6S9Z5 364 aaPredicted RBP15.47■□□□□ 0.07
CLN3-263ENST00000637871 ACP7Q6ZNF0 438 aa15.47■□□□□ 0.07
CLN3-263ENST00000637871 C20orf204Q6ZNR8 217 aa15.47■□□□□ 0.07
CLN3-263ENST00000637871 C11orf53Q8IXP5 236 aa15.47■□□□□ 0.07
CLN3-263ENST00000637871 FAM216AQ8WUB2 273 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms