RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 PPIAL4EA0A075B759 164 aa14.05□□□□□ -0.16
CLN3-252ENST00000636907 ODAMA1E959 279 aa14.05□□□□□ -0.16
CLN3-252ENST00000636907 PPIAL4DF5H284 164 aa14.05□□□□□ -0.16
CLN3-252ENST00000636907 LGALS8O00214 317 aa14.05□□□□□ -0.16
CLN3-252ENST00000636907 PPIAL4FP0DN26 164 aa14.05□□□□□ -0.16
CLN3-252ENST00000636907 IGFBP2P18065 325 aa14.05□□□□□ -0.16
CLN3-252ENST00000636907 GNRHRP30968 328 aa14.05□□□□□ -0.16
CLN3-252ENST00000636907 PPOXP50336 477 aa14.05□□□□□ -0.16
CLN3-252ENST00000636907 ANKRD55Q3KP44 614 aa14.05□□□□□ -0.16
CLN3-252ENST00000636907 LDLRAD3Q86YD5 345 aa14.05□□□□□ -0.16
CLN3-252ENST00000636907 SGPP2Q8IWX5 399 aa14.05□□□□□ -0.16
CLN3-252ENST00000636907 OR5M8Q8NGP6 311 aa14.05□□□□□ -0.16
CLN3-252ENST00000636907 OR2T35Q8NGX2 323 aa14.05□□□□□ -0.16
CLN3-252ENST00000636907 PPIAL4AQ9Y536 164 aa14.05□□□□□ -0.16
CLN3-252ENST00000636907 TANC2Q9HCD6 1990 aa14.05□□□□□ -0.16
CLN3-252ENST00000636907 SPTBN1Q01082 2364 aaKnown RBP14.05□□□□□ -0.16
CLN3-252ENST00000636907 TRAV38-1A0A0B4J264 116 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 IGHV1-69-2A0A0G2JMI3 117 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 TEX13DA0A0J9YY54 714 aaPredicted RBP14.04□□□□□ -0.16
CLN3-252ENST00000636907 A0A1W2PPR1 153 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 MEX3AA1L020 520 aaKnown RBP14.04□□□□□ -0.16
CLN3-252ENST00000636907 DBX1A6NMT0 343 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 G3V3Q6 166 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 CCSO14618 274 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 C1QL1O75973 258 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 HBZP02008 142 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 P2RX3P56373 397 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 FAM216BQ8N7L0 139 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 ZNF565Q8N9K5 539 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 RTN4IP1Q8WWV3 396 aaPredicted RBP14.04□□□□□ -0.16
CLN3-252ENST00000636907 ZNF486Q96H40 463 aaPredicted RBP14.04□□□□□ -0.16
CLN3-252ENST00000636907 LURAP1Q96LR2 239 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 TRAF4Q9BUZ4 470 aaPredicted RBP14.04□□□□□ -0.16
CLN3-252ENST00000636907 SLC5A7Q9GZV3 580 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 CBLN4Q9NTU7 201 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 ZFYVE26Q68DK2 2539 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 A0A0B4J2A0 478 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 HSPA12AO43301 675 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 HEXAP06865 529 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 SSTR5P35346 364 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 RAP2BP61225 183 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 KCNJ8Q15842 424 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 Q5BKY6 102 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 LPCAT3Q6P1A2 487 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 ZNF818PQ6ZRF7 136 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 OR5D13Q8NGL4 314 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 COQ8AQ8NI60 647 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 GALMQ96C23 342 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 DNTTIP1Q9H147 329 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 RANBP3Q9H6Z4 567 aaPredicted RBP14.04□□□□□ -0.16
CLN3-252ENST00000636907 NAA60Q9H7X0 242 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 RDH8Q9NYR8 311 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 SHPKQ9UHJ6 478 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 OPN4Q9UHM6 478 aa14.04□□□□□ -0.16
CLN3-252ENST00000636907 SIGLEC5O15389 551 aa14.03□□□□□ -0.16
CLN3-252ENST00000636907 IFNA2P01563 188 aa14.03□□□□□ -0.16
CLN3-252ENST00000636907 CD8AP01732 235 aa14.03□□□□□ -0.16
CLN3-252ENST00000636907 SOD3P08294 240 aa14.03□□□□□ -0.16
CLN3-252ENST00000636907 HLA-GP17693 338 aa14.03□□□□□ -0.16
CLN3-252ENST00000636907 ERP29P30040 261 aaKnown RBP14.03□□□□□ -0.16
CLN3-252ENST00000636907 IL2RGP31785 369 aa14.03□□□□□ -0.16
CLN3-252ENST00000636907 CEACAM6P40199 344 aa14.03□□□□□ -0.16
CLN3-252ENST00000636907 EDDM3BP56851 147 aa14.03□□□□□ -0.16
CLN3-252ENST00000636907 C11orf71Q6IPW1 123 aa14.03□□□□□ -0.16
CLN3-252ENST00000636907 OR11H4Q8NGC9 324 aa14.03□□□□□ -0.16
CLN3-252ENST00000636907 ARL11Q969Q4 196 aa14.03□□□□□ -0.16
CLN3-252ENST00000636907 HYLS1Q96M11 299 aa14.03□□□□□ -0.16
CLN3-252ENST00000636907 PARP12Q9H0J9 701 aaKnown RBP14.03□□□□□ -0.16
CLN3-252ENST00000636907 FAM234AQ9H0X4 552 aa14.03□□□□□ -0.16
CLN3-252ENST00000636907 CCL28Q9NRJ3 127 aa14.03□□□□□ -0.16
CLN3-252ENST00000636907 NKX6-3A6NJ46 265 aa14.02□□□□□ -0.16
CLN3-252ENST00000636907 C15orf65H3BRN8 121 aa14.02□□□□□ -0.16
CLN3-252ENST00000636907 GPR31O00270 319 aa14.02□□□□□ -0.16
CLN3-252ENST00000636907 HSD17B6O14756 317 aa14.02□□□□□ -0.16
CLN3-252ENST00000636907 DNASE1P24855 282 aa14.02□□□□□ -0.16
CLN3-252ENST00000636907 KIAA2026Q5HYC2 2103 aa14.02□□□□□ -0.16
CLN3-252ENST00000636907 TRAT1Q6PIZ9 186 aa14.02□□□□□ -0.16
CLN3-252ENST00000636907 CCDC71LQ8N9Z2 235 aa14.02□□□□□ -0.16
CLN3-252ENST00000636907 OR52L2PQ8NGH6 319 aa14.02□□□□□ -0.16
CLN3-252ENST00000636907 OR10V1Q8NGI7 309 aa14.02□□□□□ -0.16
CLN3-252ENST00000636907 ABCA4P78363 2273 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 TMPRSS2O15393 492 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 OR5AC1P0C628 307 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 DANCRP0C864 163 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 RNF224P0DH78 156 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 COL8A2P25067 703 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 CR1LQ2VPA4 569 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 HFEQ30201 348 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 FAM53AQ6NSI3 398 aaPredicted RBP14.01□□□□□ -0.17
CLN3-252ENST00000636907 FAM185AQ8N0U4 392 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 FGFRL1Q8N441 504 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 RFESDQ8TAC1 157 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 GALNT14Q96FL9 552 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 NCOR1P1Q9H4R4 102 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 RALYQ9UKM9 306 aaKnown RBP14.01□□□□□ -0.17
CLN3-252ENST00000636907 KCNIP3Q9Y2W7 256 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 EPG5Q9HCE0 2579 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 FAM25EA8MYX2 175 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 LYNX1G3V0Z9 82 aa14.01□□□□□ -0.17
CLN3-252ENST00000636907 TNFRSF13BO14836 293 aaPredicted RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms