RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 CLDND2Q8NHS1 167 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 CMTM2Q8TAZ6 248 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 NEIL1Q96FI4 390 aaPredicted RBP9.54□□□□□ -0.88
CLN3-244ENST00000636147 GRIFINA4D1Z8 144 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 SPCS3P61009 180 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 EIF3IQ13347 325 aaKnown RBP9.54□□□□□ -0.88
CLN3-244ENST00000636147 TIPARPQ7Z3E1 657 aaKnown RBP9.54□□□□□ -0.88
CLN3-244ENST00000636147 SELENOHQ8IZQ5 122 aaKnown RBP9.54□□□□□ -0.88
CLN3-244ENST00000636147 KDF1Q8NAX2 398 aaPredicted RBP9.54□□□□□ -0.88
CLN3-244ENST00000636147 ZNF439Q8NDP4 499 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 OR10V1Q8NGI7 309 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 ZNF837Q96EG3 531 aaPredicted RBP9.54□□□□□ -0.88
CLN3-244ENST00000636147 OR4C12Q96R67 309 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 GLRX2Q9NS18 164 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 LOC102723971A0A1B0GUV8 181 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 DUXBA0A1W2PPF3 345 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 AQP7P3A6NL99 342 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 C11orf94C9JXX5 98 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 GYPAP02724 150 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 CNN1P51911 297 aaKnown RBP9.54□□□□□ -0.88
CLN3-244ENST00000636147 ZNF468Q5VIY5 522 aaPredicted RBP9.54□□□□□ -0.88
CLN3-244ENST00000636147 SSX7Q7RTT5 188 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 ZDHHC23Q8IYP9 409 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 UHRF2Q96PU4 802 aa9.54□□□□□ -0.88
CLN3-244ENST00000636147 A0A0U1RQV5 110 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 IGHMP01871 453 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 GABRA2P47869 451 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 PRDX4Q13162 271 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 CATR1Q13166 79 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 P2RY6Q15077 328 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 ETFRF1Q6IPR1 90 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 SGMS2Q8NHU3 365 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 TMEM171Q8WVE6 324 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 RCC1LQ96I51 464 aaKnown RBP9.53□□□□□ -0.88
CLN3-244ENST00000636147 EGLN1Q9GZT9 426 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 ZNF586Q9NXT0 402 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 FBLN5Q9UBX5 448 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 LRRK1Q38SD2 2015 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 CLDN15P56746 228 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 TPPP2P59282 170 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 TMEM211Q6ICI0 200 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 UNQ6494/PRO21346Q6UXR6 183 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 GPR146Q96CH1 333 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 CDCA3Q99618 268 aaPredicted RBP9.53□□□□□ -0.88
CLN3-244ENST00000636147 NDUFAF3Q9BU61 184 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 C5orf42Q9H799 3197 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 POLEQ07864 2286 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 PROB1E7EW31 1015 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 H0Y8G0 127 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 BCAT2O15382 392 aaPredicted RBP9.53□□□□□ -0.88
CLN3-244ENST00000636147 AMBPP02760 352 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 EN2P19622 333 aaPredicted RBP9.53□□□□□ -0.88
CLN3-244ENST00000636147 CD33P20138 364 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 F2RP25116 425 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 CCKARP32238 428 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 RBM11P57052 281 aaKnown RBP9.53□□□□□ -0.88
CLN3-244ENST00000636147 SUMO1P63165 101 aaKnown RBP9.53□□□□□ -0.88
CLN3-244ENST00000636147 EDDM3AQ14507 147 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 WIPI1Q5MNZ9 446 aaPredicted RBP9.53□□□□□ -0.88
CLN3-244ENST00000636147 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.53□□□□□ -0.88
CLN3-244ENST00000636147 C1QL4Q86Z23 238 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 FAM89BQ8N5H3 189 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 RFESDQ8TAC1 157 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 ABHD5Q8WTS1 349 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 RAB24Q969Q5 203 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 MSI2Q96DH6 328 aaKnown RBP9.53□□□□□ -0.88
CLN3-244ENST00000636147 ANGPTL4Q9BY76 406 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 B3GAT1Q9P2W7 334 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 MRPS17Q9Y2R5 130 aaKnown RBP9.53□□□□□ -0.88
CLN3-244ENST00000636147 CLDN16Q9Y5I7 305 aa9.53□□□□□ -0.88
CLN3-244ENST00000636147 ARHGAP21Q5T5U3 1957 aa9.52□□□□□ -0.88
CLN3-244ENST00000636147 FCN1O00602 326 aa9.52□□□□□ -0.88
CLN3-244ENST00000636147 RPLP1P05386 114 aaKnown RBP9.52□□□□□ -0.88
CLN3-244ENST00000636147 CELA2AP08217 269 aa9.52□□□□□ -0.88
CLN3-244ENST00000636147 LYL1P12980 280 aa9.52□□□□□ -0.88
CLN3-244ENST00000636147 CEACAM6P40199 344 aa9.52□□□□□ -0.88
CLN3-244ENST00000636147 THBS3P49746 956 aa9.52□□□□□ -0.88
CLN3-244ENST00000636147 NUFIP2Q7Z417 695 aaKnown RBP9.52□□□□□ -0.88
CLN3-244ENST00000636147 OR2M3Q8NG83 312 aa9.52□□□□□ -0.88
CLN3-244ENST00000636147 BORCS7Q96B45 105 aa9.52□□□□□ -0.88
CLN3-244ENST00000636147 LYZL4Q96KX0 146 aa9.52□□□□□ -0.88
CLN3-244ENST00000636147 C12orf49Q9H741 205 aa9.52□□□□□ -0.88
CLN3-244ENST00000636147 LIN7CQ9NUP9 197 aaKnown RBP9.52□□□□□ -0.88
CLN3-244ENST00000636147 FER1L5A0AVI2 2057 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 RNF212BA8MTL3 300 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 GCGP01275 180 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 CRISP2P16562 243 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 ZNF17P17021 662 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 HGFACQ04756 655 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 HERPUD1Q15011 391 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 WDFY1Q8IWB7 410 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 DMRTC2Q8IXT2 367 aaPredicted RBP9.52□□□□□ -0.89
CLN3-244ENST00000636147 RHBDD1Q8TEB9 315 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 VSIRQ9H7M9 311 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 SRD5A3Q9H8P0 318 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 OBP2BQ9NPH6 170 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 DCAF16Q9NXF7 216 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 GNG12Q9UBI6 72 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 NAGKQ9UJ70 344 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 KIF26AQ9ULI4 1882 aaPredicted RBP9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms