RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CD3GP09693 182 aa14.7□□□□□ -0.06
CLN3-239ENST00000628023 HIST1H1DP16402 221 aaKnown RBP14.7□□□□□ -0.06
CLN3-239ENST00000628023 GNB3P16520 340 aa14.7□□□□□ -0.06
CLN3-239ENST00000628023 RCC1P18754 421 aaPredicted RBP14.7□□□□□ -0.06
CLN3-239ENST00000628023 TMEM50BP56557 158 aa14.7□□□□□ -0.06
CLN3-239ENST00000628023 PLAC9Q5JTB6 97 aa14.7□□□□□ -0.06
CLN3-239ENST00000628023 ZNF626Q68DY1 528 aa14.7□□□□□ -0.06
CLN3-239ENST00000628023 OR10A7Q8NGE5 316 aa14.7□□□□□ -0.06
CLN3-239ENST00000628023 OR5H6Q8NGV6 325 aa14.7□□□□□ -0.06
CLN3-239ENST00000628023 NDNFQ8TB73 568 aa14.7□□□□□ -0.06
CLN3-239ENST00000628023 ZNF596Q8TC21 504 aa14.7□□□□□ -0.06
CLN3-239ENST00000628023 DUX5Q96PT3 197 aa14.7□□□□□ -0.06
CLN3-239ENST00000628023 DCSTAMPQ9H295 470 aa14.7□□□□□ -0.06
CLN3-239ENST00000628023 TAF9BQ9HBM6 251 aa14.7□□□□□ -0.06
CLN3-239ENST00000628023 ZNF286AQ9HBT8 521 aa14.7□□□□□ -0.06
CLN3-239ENST00000628023 TBL2Q9Y4P3 447 aaKnown RBP14.7□□□□□ -0.06
CLN3-239ENST00000628023 DNAJC9-AS1A6NH13 148 aa14.69□□□□□ -0.06
CLN3-239ENST00000628023 ODF3BA8MYP8 253 aa14.69□□□□□ -0.06
CLN3-239ENST00000628023 C15orf65H3BRN8 121 aa14.69□□□□□ -0.06
CLN3-239ENST00000628023 RAB27BO00194 218 aa14.69□□□□□ -0.06
CLN3-239ENST00000628023 HOXA3O43365 443 aaPredicted RBP14.69□□□□□ -0.06
CLN3-239ENST00000628023 HBZP02008 142 aa14.69□□□□□ -0.06
CLN3-239ENST00000628023 GNG10P50151 68 aa14.69□□□□□ -0.06
CLN3-239ENST00000628023 ARFRP1Q13795 201 aa14.69□□□□□ -0.06
CLN3-239ENST00000628023 ARL6IP1Q15041 203 aa14.69□□□□□ -0.06
CLN3-239ENST00000628023 MOB1BQ7L9L4 216 aa14.69□□□□□ -0.06
CLN3-239ENST00000628023 RAB2BQ8WUD1 216 aa14.69□□□□□ -0.06
CLN3-239ENST00000628023 HDHD3Q9BSH5 251 aaPredicted RBP14.69□□□□□ -0.06
CLN3-239ENST00000628023 LINC00574Q9H8X3 128 aa14.69□□□□□ -0.06
CLN3-239ENST00000628023 ZMAT3Q9HA38 289 aaKnown RBP14.69□□□□□ -0.06
CLN3-239ENST00000628023 TNFRSF19Q9NS68 423 aa14.69□□□□□ -0.06
CLN3-239ENST00000628023 MBNL3Q9NUK0 354 aaKnown RBP14.69□□□□□ -0.06
CLN3-239ENST00000628023 GNG12Q9UBI6 72 aa14.69□□□□□ -0.06
CLN3-239ENST00000628023 SPATA2Q9UM82 520 aa14.69□□□□□ -0.06
CLN3-239ENST00000628023 IGHV3-43A0A0B4J1X8 118 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 BTBD17A6NE02 478 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 SERPINE3A8MV23 424 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 NAPSAO96009 420 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 IGHV3-7P01780 117 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 MELTFP08582 738 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 IGHV3-43DP0DP04 118 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 RORCP51449 518 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 PRRX1P54821 245 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 TUSC1Q2TAM9 212 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 TMEM30BQ3MIR4 351 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 OLFML2AQ68BL7 652 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 Q6YL49 198 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 LHFPL4Q7Z7J7 247 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 ZNF554Q86TJ5 538 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 OR9G1Q8NH87 305 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 OR1L1Q8NH94 360 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 C17orf50Q8WW18 174 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 LEAP2Q969E1 77 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 ESM1Q9NQ30 184 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 ZNRD1Q9P1U0 126 aa14.68□□□□□ -0.06
CLN3-239ENST00000628023 A0A087X0M5 115 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 A0A1B0GX30 115 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 MFNGO00587 321 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 HTR1DP28221 377 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 CD34P28906 385 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 TALDO1P37837 337 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 UBA52P62987 128 aaKnown RBP14.67□□□□□ -0.06
CLN3-239ENST00000628023 FOXL1Q12952 345 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 PLA1AQ53H76 456 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 UBE2NLQ5JXB2 153 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 MINOS1Q5TGZ0 78 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 SAMD12Q8N8I0 201 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 ZDHHC22Q8N966 263 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 OR52M1Q8NGK5 317 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 SSMEM1Q8WWF3 244 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 KCTD12Q96CX2 325 aaKnown RBP14.67□□□□□ -0.06
CLN3-239ENST00000628023 SLC25A38Q96DW6 304 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 DPAGT1Q9H3H5 408 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 MGAT4AQ9UM21 535 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 AMMECR1Q9Y4X0 333 aaPredicted RBP14.67□□□□□ -0.06
CLN3-239ENST00000628023 MINOS1-NBL1R4GNA1 71 aa14.67□□□□□ -0.06
CLN3-239ENST00000628023 CCDC160A6NGH7 325 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 F2RL2O00254 374 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 TMBIM6P55061 237 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 SLC9A3R2Q15599 337 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 HMGN3Q15651 99 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 SSX2Q16385 188 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 LDLRAD3Q86YD5 345 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 BEND2Q8NDZ0 799 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 OR10V1Q8NGI7 309 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 OR4P4Q8NGL7 312 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 OR10X1Q8NGY0 326 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 IL1F10Q8WWZ1 152 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 AP3S1Q92572 193 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 CREB3L1Q96BA8 519 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 GALMQ96C23 342 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 MALSU1Q96EH3 234 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 BCL7BQ9BQE9 202 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 MMP28Q9H239 520 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 PRDM13Q9H4Q3 707 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 OR2S2Q9NQN1 319 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 DIABLOQ9NR28 239 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 GFOD1Q9NXC2 390 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 PSG11Q9UQ72 335 aa14.66□□□□□ -0.06
CLN3-239ENST00000628023 KCNK7Q9Y2U2 307 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms