RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 ELOA3CA0A087WX78 387 aaPredicted RBP10.85□□□□□ -0.67
LIG1-221ENST00000613670 F2RP25116 425 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 DDTP30046 118 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 GLIPR1P48060 266 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 MRPL49Q13405 166 aaKnown RBP10.85□□□□□ -0.67
LIG1-221ENST00000613670 CXorf67Q86X51 503 aaPredicted RBP10.85□□□□□ -0.67
LIG1-221ENST00000613670 OR10V1Q8NGI7 309 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 TMEM18Q96B42 140 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 GLRX2Q9NS18 164 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 SYNGR1O43759 233 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 PAX6P26367 422 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 CEACAM6P40199 344 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 PNRC1Q12796 327 aaPredicted RBP10.85□□□□□ -0.67
LIG1-221ENST00000613670 EDDM3AQ14507 147 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 FAM58AQ8N1B3 248 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 IGKV1D-13A0A0B4J2D9 117 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 SLC22A20A6NK97 555 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 IGKV1-13P0DP09 117 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 MDH2P40926 338 aaKnown RBP10.84□□□□□ -0.67
LIG1-221ENST00000613670 ELOBQ15370 118 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 SLC35E3Q7Z769 313 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 ZNF573Q86YE8 665 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 RFESDQ8TAC1 157 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 TMEM171Q8WVE6 324 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 C18orf12Q96KH6 178 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 PHF7Q9BWX1 381 aaPredicted RBP10.84□□□□□ -0.67
LIG1-221ENST00000613670 GPR35Q9HC97 309 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 TUBG2Q9NRH3 451 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 VAX2Q9UIW0 290 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 XIRP2A4UGR9 3374 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 A0A1W2PQM1 296 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 CATR1Q13166 79 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 ICAM4Q14773 271 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 FFAR4Q5NUL3 377 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 LIN7CQ9NUP9 197 aaKnown RBP10.84□□□□□ -0.67
LIG1-221ENST00000613670 CHCHD2Q9Y6H1 151 aaPredicted RBP10.84□□□□□ -0.67
LIG1-221ENST00000613670 DOCK11Q5JSL3 2073 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 PROB1E7EW31 1015 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 PGLYRP1O75594 196 aaPredicted RBP10.84□□□□□ -0.67
LIG1-221ENST00000613670 PI4KAP42356 2102 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 PKIAP61925 76 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 TGFBR3Q03167 851 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 KCNMB1Q16558 191 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 H2BFWTQ7Z2G1 175 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 C16orf82Q7Z2V1 217 aa10.84□□□□□ -0.67
LIG1-221ENST00000613670 APOBEC3DQ96AK3 386 aaPredicted RBP10.84□□□□□ -0.67
LIG1-221ENST00000613670 ACTR3CQ9C0K3 210 aaPredicted RBP10.84□□□□□ -0.67
LIG1-221ENST00000613670 HEYLQ9NQ87 328 aaPredicted RBP10.84□□□□□ -0.67
LIG1-221ENST00000613670 MDFIC2A0A1B0GVS7 189 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 TGOLN2O43493 480 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 LTBRP36941 435 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 IL15RAQ13261 267 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 EIF3IQ13347 325 aaKnown RBP10.83□□□□□ -0.68
LIG1-221ENST00000613670 ZNF468Q5VIY5 522 aaPredicted RBP10.83□□□□□ -0.68
LIG1-221ENST00000613670 CHRNA10Q9GZZ6 450 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 ZNF391Q9UJN7 358 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 PITPNC1Q9UKF7 332 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 CRYAAP02489 173 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 RPL29P47914 159 aaKnown RBP10.83□□□□□ -0.68
LIG1-221ENST00000613670 C10orf128Q5T292 105 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 FAM78BQ5VT40 261 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 H1FOOQ8IZA3 346 aaPredicted RBP10.83□□□□□ -0.68
LIG1-221ENST00000613670 OR10G4Q8NGN3 311 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 OR10G9Q8NGN4 311 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 OR10G7Q8NGN6 311 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 PINX1Q96BK5 328 aaKnown RBP10.83□□□□□ -0.68
LIG1-221ENST00000613670 PCGF1Q9BSM1 259 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 WNT5BQ9H1J7 359 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 RBKSQ9H477 322 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 OR2W1Q9Y3N9 320 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 HS3ST3B1Q9Y662 390 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 EML5Q05BV3 1969 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 CNOT1A5YKK6 2376 aaKnown RBP10.83□□□□□ -0.68
LIG1-221ENST00000613670 RNF212BA8MTL3 300 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 CYB5R3P00387 301 aaPredicted RBP10.83□□□□□ -0.68
LIG1-221ENST00000613670 COX5AP20674 150 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 DUSP3P51452 185 aaPredicted RBP10.83□□□□□ -0.68
LIG1-221ENST00000613670 EDDM3BP56851 147 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 OR8B8Q15620 311 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 C3AR1Q16581 482 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 SPINK14Q6IE38 97 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 KCNE4Q8WWG9 221 aa10.83□□□□□ -0.68
LIG1-221ENST00000613670 RIMS4Q9H426 269 aaPredicted RBP10.83□□□□□ -0.68
LIG1-221ENST00000613670 B4DEV8 164 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 SOD3P08294 240 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 FOSL1P15407 271 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 BAGE3Q86Y29 109 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 BAGE2Q86Y30 109 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 MRPL30Q8TCC3 161 aaKnown RBP10.82□□□□□ -0.68
LIG1-221ENST00000613670 OR4C12Q96R67 309 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 ENY2Q9NPA8 101 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 GNG12Q9UBI6 72 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 NAT8Q9UHE5 227 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 DEFB108AA8MXU0 73 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 PAGE4O60829 102 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 NGFP01138 241 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 IGHV3-13P01766 116 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 IGHV3-7P01780 117 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 SRD5A2P31213 254 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 GNG3P63215 75 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms