RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 HDHD3Q9BSH5 251 aaPredicted RBP15.74■□□□□ 0.11
SHKBP1-221ENST00000599833 FUNDC2Q9BWH2 189 aa15.74■□□□□ 0.11
SHKBP1-221ENST00000599833 PECRQ9BY49 303 aa15.74■□□□□ 0.11
SHKBP1-221ENST00000599833 AK3Q9UIJ7 227 aa15.74■□□□□ 0.11
SHKBP1-221ENST00000599833 VPREB3Q9UKI3 123 aa15.74■□□□□ 0.11
SHKBP1-221ENST00000599833 PSG11Q9UQ72 335 aa15.74■□□□□ 0.11
SHKBP1-221ENST00000599833 TRBV6-6A0A0A6YYG2 114 aa15.73■□□□□ 0.11
SHKBP1-221ENST00000599833 FAM181BA6NEQ2 426 aa15.73■□□□□ 0.11
SHKBP1-221ENST00000599833 H3BUX3 64 aa15.73■□□□□ 0.11
SHKBP1-221ENST00000599833 AIREO43918 545 aa15.73■□□□□ 0.11
SHKBP1-221ENST00000599833 PAHP00439 452 aa15.73■□□□□ 0.11
SHKBP1-221ENST00000599833 ALDH3B2P48448 385 aa15.73■□□□□ 0.11
SHKBP1-221ENST00000599833 MXD1Q05195 221 aa15.73■□□□□ 0.11
SHKBP1-221ENST00000599833 DYNC1I2Q13409 638 aaKnown RBP15.73■□□□□ 0.11
SHKBP1-221ENST00000599833 LRRC75BQ2VPJ9 315 aa15.73■□□□□ 0.11
SHKBP1-221ENST00000599833 ZNF439Q8NDP4 499 aa15.73■□□□□ 0.11
SHKBP1-221ENST00000599833 OR52M1Q8NGK5 317 aa15.73■□□□□ 0.11
SHKBP1-221ENST00000599833 OR1L1Q8NH94 360 aa15.73■□□□□ 0.11
SHKBP1-221ENST00000599833 SSX3Q99909 188 aa15.73■□□□□ 0.11
SHKBP1-221ENST00000599833 VCX3AQ9NNX9 186 aa15.73■□□□□ 0.11
SHKBP1-221ENST00000599833 GFOD1Q9NXC2 390 aa15.73■□□□□ 0.11
SHKBP1-221ENST00000599833 BUB1B-PAK6H3BSN5 160 aa15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 J3QR06 171 aa15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 GPR137BO60478 399 aa15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 IGHV3-7P01780 117 aa15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 HBZP02008 142 aa15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 SNRPBP14678 240 aaKnown RBP15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 NFYBP25208 207 aa15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 LGALS4P56470 323 aa15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 HMGN3Q15651 99 aa15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 SSX2Q16385 188 aa15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 LTC4SQ16873 150 aa15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 ZNF554Q86TJ5 538 aa15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 OR9G1Q8NH87 305 aa15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 DPAGT1Q9H3H5 408 aa15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 PLEKHJ1Q9NW61 149 aa15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 C1RLQ9NZP8 487 aa15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 DAPK2Q9UIK4 370 aa15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 TRAPPC2LQ9UL33 140 aa15.72■□□□□ 0.11
SHKBP1-221ENST00000599833 MFNGO00587 321 aa15.71■□□□□ 0.11
SHKBP1-221ENST00000599833 HTR1DP28221 377 aa15.71■□□□□ 0.11
SHKBP1-221ENST00000599833 RPS19P39019 145 aaKnown RBP15.71■□□□□ 0.11
SHKBP1-221ENST00000599833 DYNLT3P51808 116 aa15.71■□□□□ 0.11
SHKBP1-221ENST00000599833 TIMM50Q3ZCQ8 353 aa15.71■□□□□ 0.11
SHKBP1-221ENST00000599833 CCBE1Q6UXH8 406 aaPredicted RBP15.71■□□□□ 0.11
SHKBP1-221ENST00000599833 OR56B1Q8NGI3 324 aa15.71■□□□□ 0.11
SHKBP1-221ENST00000599833 OR5H6Q8NGV6 325 aa15.71■□□□□ 0.11
SHKBP1-221ENST00000599833 LGALS14Q8TCE9 139 aa15.71■□□□□ 0.11
SHKBP1-221ENST00000599833 SLC25A38Q96DW6 304 aa15.71■□□□□ 0.11
SHKBP1-221ENST00000599833 MRPS26Q9BYN8 205 aaKnown RBP15.71■□□□□ 0.11
SHKBP1-221ENST00000599833 NAA50Q9GZZ1 169 aaKnown RBP15.71■□□□□ 0.11
SHKBP1-221ENST00000599833 MMP28Q9H239 520 aa15.71■□□□□ 0.11
SHKBP1-221ENST00000599833 TAF9BQ9HBM6 251 aa15.71■□□□□ 0.11
SHKBP1-221ENST00000599833 DPM3Q9P2X0 92 aa15.71■□□□□ 0.11
SHKBP1-221ENST00000599833 IGHV3-43A0A0B4J1X8 118 aa15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 SLC31A2O15432 143 aa15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 IGHV3-43DP0DP04 118 aa15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 RANBP1P43487 201 aa15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 RAB13P51153 203 aa15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 ZNF134P52741 427 aa15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 NCS1P62166 190 aa15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 LSM3P62310 102 aaKnown RBP15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 DIAPH2-AS1Q14236 149 aa15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 PLA1AQ53H76 456 aa15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 C6orf183Q5T699 404 aa15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 TPTE2P1Q5T6R2 138 aa15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 Q6ZTK2 550 aa15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 LINC00311Q8N616 119 aa15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 C8orf31Q8N9H6 132 aa15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 OR10R2Q8NGX6 335 aa15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 OR5R1Q8NH85 324 aa15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 HILPDAQ9Y5L2 63 aa15.7■□□□□ 0.1
SHKBP1-221ENST00000599833 A0A1W2PPE3 182 aa15.69■□□□□ 0.1
SHKBP1-221ENST00000599833 SDCBPO00560 298 aaPredicted RBP15.69■□□□□ 0.1
SHKBP1-221ENST00000599833 CHST1O43916 411 aa15.69■□□□□ 0.1
SHKBP1-221ENST00000599833 GNG10P50151 68 aa15.69■□□□□ 0.1
SHKBP1-221ENST00000599833 RPL15P61313 204 aaKnown RBP15.69■□□□□ 0.1
SHKBP1-221ENST00000599833 CTF1Q16619 201 aa15.69■□□□□ 0.1
SHKBP1-221ENST00000599833 TRAT1Q6PIZ9 186 aa15.69■□□□□ 0.1
SHKBP1-221ENST00000599833 ELF5Q9UKW6 265 aaPredicted RBP15.69■□□□□ 0.1
SHKBP1-221ENST00000599833 A6NDX4 124 aa15.68■□□□□ 0.1
SHKBP1-221ENST00000599833 GABARAPO95166 117 aa15.68■□□□□ 0.1
SHKBP1-221ENST00000599833 NDUFA7O95182 113 aa15.68■□□□□ 0.1
SHKBP1-221ENST00000599833 HIST1H1DP16402 221 aaKnown RBP15.68■□□□□ 0.1
SHKBP1-221ENST00000599833 ACTG1P63261 375 aa15.68■□□□□ 0.1
SHKBP1-221ENST00000599833 GNMTQ14749 295 aa15.68■□□□□ 0.1
SHKBP1-221ENST00000599833 FAM189A2Q15884 450 aa15.68■□□□□ 0.1
SHKBP1-221ENST00000599833 TMEM30BQ3MIR4 351 aa15.68■□□□□ 0.1
SHKBP1-221ENST00000599833 Q3ZCU0 254 aa15.68■□□□□ 0.1
SHKBP1-221ENST00000599833 AWAT1Q58HT5 328 aa15.68■□□□□ 0.1
SHKBP1-221ENST00000599833 ANKRD13BQ86YJ7 626 aa15.68■□□□□ 0.1
SHKBP1-221ENST00000599833 NDNFQ8TB73 568 aa15.68■□□□□ 0.1
SHKBP1-221ENST00000599833 ST6GALNAC6Q969X2 333 aa15.68■□□□□ 0.1
SHKBP1-221ENST00000599833 Q9N2K0 584 aa15.68■□□□□ 0.1
SHKBP1-221ENST00000599833 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.68■□□□□ 0.1
SHKBP1-221ENST00000599833 TCF19Q9Y242 345 aa15.68■□□□□ 0.1
SHKBP1-221ENST00000599833 A0A1W2PPI3 338 aa15.67■□□□□ 0.1
SHKBP1-221ENST00000599833 LEUTXA8MZ59 168 aa15.67■□□□□ 0.1
SHKBP1-221ENST00000599833 GNB3P16520 340 aa15.67■□□□□ 0.1
SHKBP1-221ENST00000599833 PRRX1P54821 245 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms