RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 DUSP23Q9BVJ7 150 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 LRFN1Q9P244 771 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 EXPH5Q8NEV8 1989 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 A0A0U1RQK1 487 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 TRAPPC2LH3BP13 241 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 IFNA5P01569 189 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 RAB4AP20338 218 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 PRDX4Q13162 271 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 SPINK14Q6IE38 97 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 MRPL14Q6P1L8 145 aaKnown RBP13.11□□□□□ -0.31
UPF1-204ENST00000596842 WDR5BQ86VZ2 330 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 ANGPTL4Q9BY76 406 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 SEMA5BQ9P283 1151 aa13.11□□□□□ -0.31
UPF1-204ENST00000596842 ERRFI1Q9UJM3 462 aaPredicted RBP13.11□□□□□ -0.31
UPF1-204ENST00000596842 A0A1B0GWJ7 208 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 SYNGR1O43759 233 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 NGFP01138 241 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 FOLR3P41439 243 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 TRA2AQ13595 282 aaKnown RBP eCLIP13.1□□□□□ -0.31
UPF1-204ENST00000596842 SELENOHQ8IZQ5 122 aaKnown RBP13.1□□□□□ -0.31
UPF1-204ENST00000596842 LFNGQ8NES3 379 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 OR4D5Q8NGN0 318 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 SCRT1Q9BWW7 348 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 DFFBO76075 338 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 C3AR1Q16581 482 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 DNASE2BQ8WZ79 361 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 ZNF665Q9H7R5 613 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 UBE2ZQ9H832 354 aaPredicted RBP13.1□□□□□ -0.31
UPF1-204ENST00000596842 hCG_38984A0A1B0GV85 526 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 GJE1A6NN92 205 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 FAM166BA8MTA8 275 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 WDR1O75083 606 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 MMP9P14780 707 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 BPIFB3P59826 476 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 ERVFRD-1P60508 538 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 NUTF2P61970 127 aaKnown RBP13.1□□□□□ -0.31
UPF1-204ENST00000596842 SPEM1Q8N4L4 309 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 SCGB1C1Q8TD33 95 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 PLK3Q9H4B4 646 aa13.1□□□□□ -0.31
UPF1-204ENST00000596842 GTF3C1Q12789 2109 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 OR6C6A6NF89 314 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 FKBP2P26885 142 aaKnown RBP13.09□□□□□ -0.31
UPF1-204ENST00000596842 PMS2P11Q13670 270 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 OR8G2PQ6IF36 304 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 MKXQ8IYA7 352 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 LYPD6BQ8NI32 183 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 CHD3Q12873 2000 aaKnown RBP13.09□□□□□ -0.31
UPF1-204ENST00000596842 USF3Q68DE3 2245 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 SLC22A20A6NK97 555 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 PGA5P0DJD9 388 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 PSG2P11465 335 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 ZNF880Q6PDB4 577 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 PSMF1Q92530 271 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 GPR35Q9HC97 309 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 CA11O75493 328 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 RBMXL2O75526 392 aaKnown RBP13.09□□□□□ -0.31
UPF1-204ENST00000596842 CST2P09228 141 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 TESK1Q15569 626 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 AGBL5Q8NDL9 886 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 C10orf35Q96D05 121 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 EGLN1Q9GZT9 426 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 MSL2Q9HCI7 577 aa13.09□□□□□ -0.31
UPF1-204ENST00000596842 DSPP15924 2871 aaKnown RBP13.09□□□□□ -0.31
UPF1-204ENST00000596842 CEBPZOSA8MTT3 80 aa13.08□□□□□ -0.32
UPF1-204ENST00000596842 SPANXN5Q5MJ07 72 aa13.08□□□□□ -0.32
UPF1-204ENST00000596842 A0A0G2JRQ6 117 aa13.08□□□□□ -0.32
UPF1-204ENST00000596842 HOXA5P20719 270 aa13.08□□□□□ -0.32
UPF1-204ENST00000596842 BMP5P22003 454 aa13.08□□□□□ -0.32
UPF1-204ENST00000596842 EXT1Q16394 746 aa13.08□□□□□ -0.32
UPF1-204ENST00000596842 SPSB3Q6PJ21 355 aa13.08□□□□□ -0.32
UPF1-204ENST00000596842 C12orf49Q9H741 205 aa13.08□□□□□ -0.32
UPF1-204ENST00000596842 VSIRQ9H7M9 311 aa13.08□□□□□ -0.32
UPF1-204ENST00000596842 GVINP1Q7Z2Y8 2422 aa13.08□□□□□ -0.32
UPF1-204ENST00000596842 TOX3O15405 576 aaPredicted RBP13.08□□□□□ -0.32
UPF1-204ENST00000596842 KLF7O75840 302 aaPredicted RBP13.08□□□□□ -0.32
UPF1-204ENST00000596842 FOXO1Q12778 655 aa13.08□□□□□ -0.32
UPF1-204ENST00000596842 OR2V1Q8NHB1 315 aa13.08□□□□□ -0.32
UPF1-204ENST00000596842 RNF138Q8WVD3 245 aa13.08□□□□□ -0.32
UPF1-204ENST00000596842 TVP23CQ96ET8 276 aa13.08□□□□□ -0.32
UPF1-204ENST00000596842 ARV1Q9H2C2 271 aa13.08□□□□□ -0.32
UPF1-204ENST00000596842 PATZ1Q9HBE1 687 aaKnown RBP13.08□□□□□ -0.32
UPF1-204ENST00000596842 LYRM2Q9NU23 88 aaPredicted RBP13.08□□□□□ -0.32
UPF1-204ENST00000596842 DECR2Q9NUI1 292 aa13.08□□□□□ -0.32
UPF1-204ENST00000596842 CACNA1GO43497 2377 aa13.08□□□□□ -0.32
UPF1-204ENST00000596842 TUSC2O75896 110 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 CDS2O95674 445 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 SRP19P09132 144 aaKnown RBP13.07□□□□□ -0.32
UPF1-204ENST00000596842 IL2RGP31785 369 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 RAB1AP62820 205 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 HIST1H3AP68431 136 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 TLE4Q04727 773 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 ARSJQ5FYB0 599 aaPredicted RBP13.07□□□□□ -0.32
UPF1-204ENST00000596842 TMEM211Q6ICI0 200 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 HEPN1Q6WQI6 88 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 ERASQ7Z444 233 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 CPT1CQ8TCG5 803 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 IMMP1LQ96LU5 166 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 ZNF552Q9H707 407 aaPredicted RBP13.07□□□□□ -0.32
UPF1-204ENST00000596842 CACNG5Q9UF02 275 aa13.07□□□□□ -0.32
UPF1-204ENST00000596842 RNF150Q9ULK6 438 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms