RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 TMED9Q9BVK6 235 aa10.36□□□□□ -0.75
LIG1-212ENST00000596549 SELENOIQ9C0D9 397 aa10.36□□□□□ -0.75
LIG1-212ENST00000596549 SPACA1Q9HBV2 294 aa10.36□□□□□ -0.75
LIG1-212ENST00000596549 ETAA1Q9NY74 926 aa10.36□□□□□ -0.75
LIG1-212ENST00000596549 IGHV3-72A0A0B4J1Y9 119 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 IGHV1-3A0A0C4DH29 117 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 FAM90A10PA6NDY2 464 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 FAM90A7PA6NKC0 464 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 FAM90A23PA8MXZ1 464 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 MCRIP1C9JLW8 97 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 M0QZK8 103 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 CRTAPO75718 401 aaPredicted RBP10.35□□□□□ -0.75
LIG1-212ENST00000596549 TMEM11P17152 192 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 RCC1P18754 421 aaPredicted RBP10.35□□□□□ -0.75
LIG1-212ENST00000596549 GZMHP20718 246 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 GPR50Q13585 617 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 SPHARQ15513 63 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 ACSM3Q53FZ2 586 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 RBM48Q5RL73 367 aaKnown RBP10.35□□□□□ -0.75
LIG1-212ENST00000596549 C5orf24Q7Z6I8 188 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 IZUMO1Q8IYV9 350 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 C8orf31Q8N9H6 132 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 MYDGFQ969H8 173 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 ST6GALNAC6Q969X2 333 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 UQCC2Q9BRT2 126 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 PEX16Q9Y5Y5 336 aa10.35□□□□□ -0.75
LIG1-212ENST00000596549 PTGES3LE9PB15 166 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 CCRL2O00421 344 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 FGF16O43320 207 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 FAM106CPP0CH98 169 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 VSIG8P0DPA2 414 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 ZNF137PP52743 207 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 EMX1Q04741 257 aaPredicted RBP10.34□□□□□ -0.75
LIG1-212ENST00000596549 UNC119Q13432 240 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 EBI3Q14213 229 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 HES1Q14469 280 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 GNMTQ14749 295 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 MED22Q15528 200 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 OXLD1Q5BKU9 147 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 C9orf152Q5JTZ5 239 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 OR10K2Q6IF99 312 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 Q6ZPA2 131 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 SLC25A48Q6ZT89 311 aaKnown RBP10.34□□□□□ -0.75
LIG1-212ENST00000596549 Q8N6K4 173 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 OR4F17Q8NGA8 305 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 OR10V1Q8NGI7 309 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 OR1L1Q8NH94 360 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 MRPL30Q8TCC3 161 aaKnown RBP10.34□□□□□ -0.75
LIG1-212ENST00000596549 RTN4IP1Q8WWV3 396 aaPredicted RBP10.34□□□□□ -0.75
LIG1-212ENST00000596549 OR4F4Q96R69 305 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 ANKRD60Q9BZ19 345 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 MBNL3Q9NUK0 354 aaKnown RBP10.34□□□□□ -0.75
LIG1-212ENST00000596549 TRAPPC2LQ9UL33 140 aa10.34□□□□□ -0.75
LIG1-212ENST00000596549 UBE2QL1A1L167 161 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 H3BUI4 141 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 PDCD6O75340 191 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 MPIG6BO95866 241 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 HBZP02008 142 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 PRB2P02812 416 aaPredicted RBP10.33□□□□□ -0.76
LIG1-212ENST00000596549 MYF6P23409 242 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 CHATP28329 748 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 ZNF134P52741 427 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 HNF4GQ14541 408 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 Q3ZCU0 254 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 C1orf100Q5SVJ3 147 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 C6orf183Q5T699 404 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 CENPVQ7Z7K6 275 aaPredicted RBP10.33□□□□□ -0.76
LIG1-212ENST00000596549 PRR18Q8N4B5 295 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 MS4A15Q8N5U1 240 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 OR4X2Q8NGF9 303 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 PHYHIPQ92561 330 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 NOL4LQ96MY1 436 aaPredicted RBP10.33□□□□□ -0.76
LIG1-212ENST00000596549 GFI1Q99684 422 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 NICN1Q9BSH3 213 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 DUSP21Q9H596 190 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 GHRLQ9UBU3 117 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 TGP01266 2768 aa10.33□□□□□ -0.76
LIG1-212ENST00000596549 ZNF736B4DX44 427 aaPredicted RBP10.32□□□□□ -0.76
LIG1-212ENST00000596549 GAPDHP04406 335 aaKnown RBP10.32□□□□□ -0.76
LIG1-212ENST00000596549 UCHL1P09936 223 aa10.32□□□□□ -0.76
LIG1-212ENST00000596549 CD37P11049 281 aa10.32□□□□□ -0.76
LIG1-212ENST00000596549 FUT3P21217 361 aa10.32□□□□□ -0.76
LIG1-212ENST00000596549 RPS25P62851 125 aaKnown RBP10.32□□□□□ -0.76
LIG1-212ENST00000596549 QRFPP83859 136 aa10.32□□□□□ -0.76
LIG1-212ENST00000596549 TMEM30BQ3MIR4 351 aa10.32□□□□□ -0.76
LIG1-212ENST00000596549 HSD17B12Q53GQ0 312 aa10.32□□□□□ -0.76
LIG1-212ENST00000596549 CT45A1Q5HYN5 189 aa10.32□□□□□ -0.76
LIG1-212ENST00000596549 NKAPLQ5M9Q1 402 aa10.32□□□□□ -0.76
LIG1-212ENST00000596549 LIPKQ5VXJ0 399 aa10.32□□□□□ -0.76
LIG1-212ENST00000596549 TMEM91Q6ZNR0 172 aa10.32□□□□□ -0.76
LIG1-212ENST00000596549 CT45A3Q8NHU0 189 aa10.32□□□□□ -0.76
LIG1-212ENST00000596549 PHF21AQ96BD5 680 aa10.32□□□□□ -0.76
LIG1-212ENST00000596549 EAF1Q96JC9 268 aaPredicted RBP10.32□□□□□ -0.76
LIG1-212ENST00000596549 SULT4A1Q9BR01 284 aa10.32□□□□□ -0.76
LIG1-212ENST00000596549 CST11Q9H112 138 aa10.32□□□□□ -0.76
LIG1-212ENST00000596549 TAF9BQ9HBM6 251 aa10.32□□□□□ -0.76
LIG1-212ENST00000596549 SCN3BQ9NY72 215 aa10.32□□□□□ -0.76
LIG1-212ENST00000596549 TSSC4Q9Y5U2 329 aaPredicted RBP10.32□□□□□ -0.76
LIG1-212ENST00000596549 A0A0A6YYD4 124 aa10.31□□□□□ -0.76
LIG1-212ENST00000596549 TCRBV4S1A1TA0A5B7 111 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms