RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 SMARCD3Q6STE5 483 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 GLT6D1Q7Z4J2 308 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 CPNE9Q8IYJ1 553 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 OR6V1Q8N148 313 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 LRRC25Q8N386 305 aaPredicted RBP3.26□□□□□ -1.89
NUP88-213ENST00000576862 KIR3DL3Q8N743 410 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 MDS2Q8NDY4 140 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 OR1S2Q8NGQ3 325 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 SFXN5Q8TD22 340 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 NAT14Q8WUY8 206 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 OR5P2Q8WZ92 322 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 RCN3Q96D15 328 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 ZHX1-C8orf76Q96EF9 292 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 MED8Q96G25 268 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 OR10C1Q96KK4 312 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 TMEM56Q96MV1 263 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 SORT1Q99523 831 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 PHB2Q99623 299 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 CDCA4Q9BXL8 241 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 SPNS1Q9H2V7 528 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 FAM96AQ9H5X1 160 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 IFT46Q9NQC8 304 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 SLC25A37Q9NYZ2 338 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 BTNL2Q9UIR0 455 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 KLK12Q9UKR0 248 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 COPS3Q9UNS2 423 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 RPL26L1Q9UNX3 145 aaKnown RBP3.26□□□□□ -1.89
NUP88-213ENST00000576862 TMEM56-RWDD3S4R434 201 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 NACAE9PAV3 2078 aa3.26□□□□□ -1.89
NUP88-213ENST00000576862 ZNF816-ZNF321PA0A0X1KG74 233 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 A8MT66 165 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 TRDCB7Z8K6 153 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 CDC7O00311 574 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 HSD17B6O14756 317 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 MRPS12O15235 138 aaKnown RBP3.25□□□□□ -1.89
NUP88-213ENST00000576862 NUPL2O15504 423 aaKnown RBP3.25□□□□□ -1.89
NUP88-213ENST00000576862 ARPC5O15511 151 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 ERI3O43414 337 aaKnown RBP3.25□□□□□ -1.89
NUP88-213ENST00000576862 RAD1O60671 282 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 EIF1BO60739 113 aaKnown RBP3.25□□□□□ -1.89
NUP88-213ENST00000576862 UGT2B11O75310 529 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 EEDO75530 441 aaKnown RBP3.25□□□□□ -1.89
NUP88-213ENST00000576862 GCGP01275 180 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 CATP04040 527 aaKnown RBP3.25□□□□□ -1.89
NUP88-213ENST00000576862 CD74P04233 296 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 CTSLP07711 333 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 COX4I1P13073 169 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 IFI30P13284 250 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 AKR1C4P17516 323 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 ELK4P28324 431 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 ERP29P30040 261 aaKnown RBP3.25□□□□□ -1.89
NUP88-213ENST00000576862 EIF1P41567 113 aaKnown RBP3.25□□□□□ -1.89
NUP88-213ENST00000576862 AQP5P55064 265 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 VSX2P58304 361 aaPredicted RBP3.25□□□□□ -1.89
NUP88-213ENST00000576862 TAS2R31P59538 309 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 CD164Q04900 197 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 EDDM3AQ14507 147 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 GINS1Q14691 196 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 TSNQ15631 228 aaKnown RBP3.25□□□□□ -1.89
NUP88-213ENST00000576862 ATP6AP1Q15904 470 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 CARD16Q5EG05 197 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 OR10J3Q5JRS4 329 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 CASP12Q6UXS9 341 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 RFLNAQ6ZTI6 216 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 ASCL5Q7RTU5 278 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 FAM19A1Q7Z5A9 133 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 RALGPS2Q86X27 583 aaPredicted RBP3.25□□□□□ -1.89
NUP88-213ENST00000576862 ACOT4Q8N9L9 421 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 DUSP18Q8NEJ0 188 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 OR52H1Q8NGJ2 320 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 UFD1Q92890 307 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 FGF13Q92913 245 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 SMIM12Q96EX1 92 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 BIRC8Q96P09 236 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 RBP7Q96R05 134 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 LYSMD1Q96S90 227 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 MRPL57Q9BQC6 102 aaKnown RBP3.25□□□□□ -1.89
NUP88-213ENST00000576862 C2orf88Q9BSF0 95 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 NXF2Q9GZY0 626 aaKnown RBP3.25□□□□□ -1.89
NUP88-213ENST00000576862 TXNIPQ9H3M7 391 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 TMEM38AQ9H6F2 299 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 GLTPQ9NZD2 209 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 ASF1AQ9Y294 204 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 UGT2A1Q9Y4X1 527 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 HSPB11Q9Y547 144 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 GTF3C1Q12789 2109 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 PTPRDP23468 1912 aa3.25□□□□□ -1.89
NUP88-213ENST00000576862 MICAL3Q7RTP6 2002 aa3.24□□□□□ -1.89
NUP88-213ENST00000576862 A0A0G2JRQ6 117 aa3.24□□□□□ -1.89
NUP88-213ENST00000576862 TINCRA0A1B0GVN0 87 aa3.24□□□□□ -1.89
NUP88-213ENST00000576862 SMIM9A6NGZ8 99 aa3.24□□□□□ -1.89
NUP88-213ENST00000576862 OR5B21A6NL26 309 aa3.24□□□□□ -1.89
NUP88-213ENST00000576862 LYRM9A8MSI8 78 aa3.24□□□□□ -1.89
NUP88-213ENST00000576862 LINC00587B1AMM8 73 aa3.24□□□□□ -1.89
NUP88-213ENST00000576862 IDSB3KWA1 339 aa3.24□□□□□ -1.89
NUP88-213ENST00000576862 PPP5D1E7EU14 171 aa3.24□□□□□ -1.89
NUP88-213ENST00000576862 ATP6V1G2-DDX39BF2Z307 99 aa3.24□□□□□ -1.89
NUP88-213ENST00000576862 UBDO15205 165 aa3.24□□□□□ -1.89
NUP88-213ENST00000576862 FABP7O15540 132 aa3.24□□□□□ -1.89
NUP88-213ENST00000576862 PRKYO43930 277 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms