RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CXorf66Q5JRM2 361 aaPredicted RBP8.55□□□□□ -1.04
VPS53-220ENST00000576149 FAM214BQ7L5A3 538 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 Q8IYB0 196 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 GCNT2Q8N0V5 402 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 SCCPDHQ8NBX0 429 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 PLPPR1Q8TBJ4 325 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 SH3BGRL3Q9H299 93 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 PLEKHF2Q9H8W4 249 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 CACFD1Q9UGQ2 172 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 POLDIP2Q9Y2S7 368 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 IGSF23A1L1A6 192 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 PGPEP1LA6NFU8 196 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 ATP6V1G2-DDX39BF2Z307 99 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 TNFSF12O43508 249 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 SLC25A17O43808 307 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 LYZL6O75951 148 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 TSPAN15O95858 294 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 ACAA1P09110 424 aaPredicted RBP8.55□□□□□ -1.04
VPS53-220ENST00000576149 NPBWR1P48145 328 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 CCL11P51671 97 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 ERVS71-1P61550 626 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 HTD2P86397 168 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 SRSF6Q13247 344 aaKnown RBP8.55□□□□□ -1.04
VPS53-220ENST00000576149 GUSBP1Q15486 140 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 MIDNQ504T8 468 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 Q6ZT83 130 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 COMMD1Q8N668 190 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 FDCSPQ8NFU4 85 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 LYRM2Q9NU23 88 aaPredicted RBP8.55□□□□□ -1.04
VPS53-220ENST00000576149 ERRFI1Q9UJM3 462 aaPredicted RBP8.55□□□□□ -1.04
VPS53-220ENST00000576149 BDP1A6H8Y1 2624 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 IQCF6A8MYZ5 107 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 SLC33A1O00400 549 aaPredicted RBP8.54□□□□□ -1.04
VPS53-220ENST00000576149 SSSCA1O60232 199 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 CIDEAO60543 219 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 OR2H2O95918 312 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 WNT2P09544 360 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 MMP9P14780 707 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 S100GP29377 79 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 SNCAP37840 140 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 CAMLGP49069 296 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 ALKBH6Q3KRA9 238 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 INO80CQ6PI98 192 aaPredicted RBP8.54□□□□□ -1.04
VPS53-220ENST00000576149 IGFL2Q6UWQ7 119 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 ZNF497Q6ZNH5 498 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 MOB1BQ7L9L4 216 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 CBLN2Q8IUK8 224 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 TMEM252Q8N6L7 170 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 HSD17B11Q8NBQ5 300 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 OR10V1Q8NGI7 309 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 SLC25A40Q8TBP6 338 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 TRIB1Q96RU8 372 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 SLC25A31Q9H0C2 315 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 MAGT1Q9H0U3 335 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 STRAPQ9Y3F4 350 aaKnown RBP8.54□□□□□ -1.04
VPS53-220ENST00000576149 DOCK7Q96N67 2140 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 PROB1E7EW31 1015 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.54□□□□□ -1.04
VPS53-220ENST00000576149 SIRPB1O00241 398 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 CDIPTO14735 213 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 PITX3O75364 302 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 WISP2O76076 250 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 PGA5P0DJD9 388 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 LMO1P25800 156 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 FHITP49789 147 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 ASCL1P50553 236 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 VAMP2P63027 116 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 ZNF616Q08AN1 781 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 PSG7Q13046 419 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 ZNF154Q13106 437 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 ZNF266Q14584 549 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 ZNF146Q15072 292 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 FAM209BQ5JX69 171 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 DEFB124Q8NES8 71 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 IL1F10Q8WWZ1 152 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 SCRT1Q9BWW7 348 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 ASCL3Q9NQ33 180 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 C19orf12Q9NSK7 152 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 OR1A1Q9P1Q5 309 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 NDRG3Q9UGV2 375 aa8.54□□□□□ -1.04
VPS53-220ENST00000576149 PIGBOS1A0A0B4J2F0 54 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 SMAD7O15105 426 aaKnown RBP8.53□□□□□ -1.04
VPS53-220ENST00000576149 C1QL1O75973 258 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 TMEM50AO95807 157 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 IGLV2-14P01704 120 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 PRH1P02810 166 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 FTH1P19P0C7X4 201 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 CLINT1Q14677 625 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 MED12LQ86YW9 2145 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 ODF3L1Q8IXM7 274 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 OR1J1Q8NGS3 322 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 TMEM171Q8WVE6 324 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 TAAR3PQ9P1P4 343 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 RNF115Q9Y4L5 304 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 TRAV39A0A0B4J263 110 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 ATXN7O15265 892 aaPredicted RBP8.53□□□□□ -1.04
VPS53-220ENST00000576149 HEXAP06865 529 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 SLC25A6P12236 298 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 SELEP16581 610 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 TESK1Q15569 626 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms