RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 AQP8O94778 261 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 IFNGP01579 166 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 S100A8P05109 93 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 FKBP2P26885 142 aaKnown RBP5.71□□□□□ -1.49
VPS53-217ENST00000575100 HOXD3P31249 432 aaPredicted RBP5.71□□□□□ -1.49
VPS53-217ENST00000575100 CA7P43166 264 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 SNRPGP62308 76 aaKnown RBP5.71□□□□□ -1.49
VPS53-217ENST00000575100 SLC35A1P78382 337 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 MRPS11P82912 194 aaKnown RBP5.71□□□□□ -1.49
VPS53-217ENST00000575100 DHODHQ02127 395 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 ASAH1Q13510 395 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 DOC2BQ14184 412 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 AKIRIN2Q53H80 203 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 FAHD2BQ6P2I3 314 aaPredicted RBP5.71□□□□□ -1.49
VPS53-217ENST00000575100 ZIC4Q8N9L1 334 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 ZNF519Q8TB69 540 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 FNDC9Q8TBE3 224 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 FAHD2AQ96GK7 314 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 RITA1Q96K30 269 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 SHARPINQ9H0F6 387 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 SMPXQ9UHP9 88 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 HSPE1-MOB4S4R3N1 261 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 DNAJC13O75165 2243 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 C9orf170A2RU37 121 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 TFAP2AP05549 437 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 TACSTD2P09758 323 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 ABOP16442 354 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 JUNBP17275 347 aaPredicted RBP5.71□□□□□ -1.5
VPS53-217ENST00000575100 SLC2A5P22732 501 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 ZNF91Q05481 1191 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 FMODQ06828 376 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 KRR1Q13601 381 aaKnown RBP5.71□□□□□ -1.5
VPS53-217ENST00000575100 DGUOKQ16854 277 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 ATP6V1FQ16864 119 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 RBM48Q5RL73 367 aaKnown RBP5.71□□□□□ -1.5
VPS53-217ENST00000575100 XKRXQ6PP77 449 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 GFRALQ6UXV0 394 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 FAM57BQ71RH2 274 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 KIR3DL3Q8N743 410 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 ARIH2OSQ8N7S6 290 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 MAPKAPK5-AS1Q8N8E1 139 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 OR52H1Q8NGJ2 320 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 OR5H6Q8NGV6 325 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 IL17DQ8TAD2 202 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 TRUB1Q8WWH5 349 aaKnown RBP5.71□□□□□ -1.5
VPS53-217ENST00000575100 PTH2Q96A98 100 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 YIPF6Q96EC8 236 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 CCDC90BQ9GZT6 254 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 TXNIPQ9H3M7 391 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 FNDC4Q9H6D8 234 aaPredicted RBP5.71□□□□□ -1.5
VPS53-217ENST00000575100 TAS2R16Q9NYV7 291 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 MYRFQ9Y2G1 1151 aa5.71□□□□□ -1.5
VPS53-217ENST00000575100 A0A0A6YYD4 124 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 A0A0G2JK05 382 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 TRBV7-9A0A0J9YWB2 115 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 PSMB11A5LHX3 300 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 GJE1A6NN92 205 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 M0R036 132 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 PRRG2O14669 202 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 WDR1O75083 606 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 IGHMP01871 453 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 TCRBP04435 133 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 FGF2P09038 288 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 IGHV4-31P0DP07 118 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 COX6B1P14854 86 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 SSTR2P30874 369 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 SELENOPP49908 381 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 BIDP55957 195 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 BTG1P62324 171 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 SLC35A2P78381 396 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 BSXQ3C1V8 233 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 GCSAMLQ5JQS6 135 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 ACTL10Q5JWF8 245 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 SLC25A30Q5SVS4 291 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 CREB3L2Q70SY1 520 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 MRGPRGQ86SM5 289 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 PUSL1Q8N0Z8 303 aaKnown RBP5.7□□□□□ -1.5
VPS53-217ENST00000575100 OR6V1Q8N148 313 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 RPRMLQ8N4K4 120 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 GVQW1Q8N7I0 195 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 C15orf54Q8N8G6 183 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 LFNGQ8NES3 379 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 RNF2Q99496 336 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 ZNF696Q9H7X3 374 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 TPSG1Q9NRR2 321 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 TREM2Q9NZC2 230 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 ST6GALNAC2Q9UJ37 374 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 KCNG2Q9UJ96 466 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 MOKQ9UQ07 419 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 PSG11Q9UQ72 335 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 POLQO75417 2590 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 PCNX1Q96RV3 2341 aa5.7□□□□□ -1.5
VPS53-217ENST00000575100 LOC102725191A0A1B0GVB3 256 aa5.69□□□□□ -1.5
VPS53-217ENST00000575100 A0A1B0GVI7 797 aa5.69□□□□□ -1.5
VPS53-217ENST00000575100 TVP23AA6NH52 213 aa5.69□□□□□ -1.5
VPS53-217ENST00000575100 RIIAD1A6NNX1 92 aa5.69□□□□□ -1.5
VPS53-217ENST00000575100 CCL21O00585 134 aa5.69□□□□□ -1.5
VPS53-217ENST00000575100 HSD17B6O14756 317 aa5.69□□□□□ -1.5
VPS53-217ENST00000575100 PPIHO43447 177 aaKnown RBP5.69□□□□□ -1.5
VPS53-217ENST00000575100 FAM20BO75063 409 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms