RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 OR4F5Q8NH21 305 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 OR4F4Q96R69 305 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 PHF7Q9BWX1 381 aaPredicted RBP12.43□□□□□ -0.42
VPS35-210ENST00000568784 A0A0G2JRQ6 117 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 ANKRD30BLA7E2S9 258 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 H7BYZ3 331 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 IFNA10P01566 189 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 HNF1AP20823 631 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 CRYGSP22914 178 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 NCR3LG1Q68D85 454 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 SPINK14Q6IE38 97 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 ZNF66Q6ZN08 573 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 MRPL41Q8IXM3 137 aaKnown RBP12.43□□□□□ -0.42
VPS35-210ENST00000568784 CCDC54Q8NEL0 328 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 LYPD6BQ8NI32 183 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 CLDN23Q96B33 292 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 ARV1Q9H2C2 271 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 CA6P23280 308 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 FOXG1P55316 489 aaPredicted RBP12.42□□□□□ -0.42
VPS35-210ENST00000568784 ZNF816Q0VGE8 651 aaPredicted RBP12.42□□□□□ -0.42
VPS35-210ENST00000568784 EXT1Q16394 746 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.42□□□□□ -0.42
VPS35-210ENST00000568784 CPEB3Q8NE35 698 aaKnown RBP12.42□□□□□ -0.42
VPS35-210ENST00000568784 TREM2Q9NZC2 230 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 OR1A1Q9P1Q5 309 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 FOXD3Q9UJU5 478 aaPredicted RBP12.42□□□□□ -0.42
VPS35-210ENST00000568784 DEGS1O15121 323 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 PGLYRP1O75594 196 aaPredicted RBP12.42□□□□□ -0.42
VPS35-210ENST00000568784 OTX1P32242 354 aaPredicted RBP12.42□□□□□ -0.42
VPS35-210ENST00000568784 BAXQ07812 192 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 LINC00696Q6ZRV3 163 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 CLDND2Q8NHS1 167 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 ADGRG7Q96K78 797 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 PLA2G3Q9NZ20 509 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 ARGFXA6NJG6 315 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 ZNF729A6NN14 1252 aaPredicted RBP12.42□□□□□ -0.42
VPS35-210ENST00000568784 EPHA8P29322 1005 aaPredicted RBP12.42□□□□□ -0.42
VPS35-210ENST00000568784 GLIPR1P48060 266 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 HBG1P69891 147 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 HBG2P69892 147 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 IL24Q13007 206 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 CST9LP1Q5W188 147 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 SCRT1Q9BWW7 348 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 SMOC1Q9H4F8 434 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 Q9N2K0 584 aa12.42□□□□□ -0.42
VPS35-210ENST00000568784 SYNGR2O43760 224 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 HSPB1P04792 205 aaKnown RBP12.41□□□□□ -0.42
VPS35-210ENST00000568784 DEFA4P12838 97 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 F2RP25116 425 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 PAX6P26367 422 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 UBE2G2P60604 165 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 RTP5Q14D33 572 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 ZNF709Q8N972 641 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 CLEC18AA5D8T8 446 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 PATE3B3GLJ2 98 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 PPP5D1E7EU14 171 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 MMP7P09237 267 aaPredicted RBP12.41□□□□□ -0.42
VPS35-210ENST00000568784 CLEC18CQ8NCF0 446 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 FAM234AQ9H0X4 552 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 ZNF552Q9H707 407 aaPredicted RBP12.41□□□□□ -0.42
VPS35-210ENST00000568784 CRIM1Q9NZV1 1036 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 CPAMD8Q8IZJ3 1885 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 SPTBN2O15020 2390 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 EP300Q09472 2414 aaPredicted RBP12.41□□□□□ -0.42
VPS35-210ENST00000568784 ZNF737O75373 536 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 SYNGR4O95473 234 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 GRPP07492 148 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 BCL2P10415 239 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 CXorf67Q86X51 503 aaPredicted RBP12.41□□□□□ -0.42
VPS35-210ENST00000568784 LRTM2Q8N967 370 aa12.41□□□□□ -0.42
VPS35-210ENST00000568784 IGLV3-32A0A0A0MS00 114 aa12.4□□□□□ -0.42
VPS35-210ENST00000568784 YKT6O15498 198 aa12.4□□□□□ -0.42
VPS35-210ENST00000568784 CHRNA7P36544 502 aa12.4□□□□□ -0.42
VPS35-210ENST00000568784 TUSC5Q8IXB3 177 aa12.4□□□□□ -0.42
VPS35-210ENST00000568784 RBKSQ9H477 322 aa12.4□□□□□ -0.42
VPS35-210ENST00000568784 IGHV1-45A0A0A0MS14 117 aa12.4□□□□□ -0.42
VPS35-210ENST00000568784 SELEP16581 610 aa12.4□□□□□ -0.42
VPS35-210ENST00000568784 GPX4P36969 197 aaPredicted RBP12.4□□□□□ -0.42
VPS35-210ENST00000568784 STARD6P59095 220 aa12.4□□□□□ -0.42
VPS35-210ENST00000568784 EIF3IQ13347 325 aaKnown RBP12.4□□□□□ -0.42
VPS35-210ENST00000568784 MTCH1Q9NZJ7 389 aa12.4□□□□□ -0.42
VPS35-210ENST00000568784 UCP3P55916 312 aa12.4□□□□□ -0.42
VPS35-210ENST00000568784 ZNF506Q5JVG8 444 aa12.4□□□□□ -0.42
VPS35-210ENST00000568784 Q6ZPA2 131 aa12.4□□□□□ -0.42
VPS35-210ENST00000568784 THOC3Q96J01 351 aaKnown RBP12.4□□□□□ -0.42
VPS35-210ENST00000568784 OPA3Q9H6K4 179 aa12.4□□□□□ -0.42
VPS35-210ENST00000568784 PPIHO43447 177 aaKnown RBP12.4□□□□□ -0.43
VPS35-210ENST00000568784 EGR1P18146 543 aa12.4□□□□□ -0.43
VPS35-210ENST00000568784 CYB561P49447 251 aa12.4□□□□□ -0.43
VPS35-210ENST00000568784 CADP27708 2225 aa12.39□□□□□ -0.43
VPS35-210ENST00000568784 XKRY2A2RUG3 117 aa12.39□□□□□ -0.43
VPS35-210ENST00000568784 UMODP07911 640 aa12.39□□□□□ -0.43
VPS35-210ENST00000568784 COX6A1P12074 109 aa12.39□□□□□ -0.43
VPS35-210ENST00000568784 HERPUD1Q15011 391 aa12.39□□□□□ -0.43
VPS35-210ENST00000568784 SSX2Q16385 188 aa12.39□□□□□ -0.43
VPS35-210ENST00000568784 ZNF385CQ66K41 422 aaPredicted RBP12.39□□□□□ -0.43
VPS35-210ENST00000568784 IFITM10A6NMD0 228 aa12.39□□□□□ -0.43
VPS35-210ENST00000568784 PTBP3O95758 552 aaKnown RBP12.39□□□□□ -0.43
VPS35-210ENST00000568784 IGLV3-1P01715 115 aa12.39□□□□□ -0.43
VPS35-210ENST00000568784 OR13D1Q8NGV5 346 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms