RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 LGALS14Q8TCE9 139 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 PSMF1Q92530 271 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 NDRG1Q92597 394 aaKnown RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 FAM131CQ96AQ9 280 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 EID2BQ96D98 161 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 GRAMD2BQ96HH9 432 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 LYZL4Q96KX0 146 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 DGAT2Q96PD7 388 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 UHRF2Q96PU4 802 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 SLC25A21Q9BQT8 299 aaPredicted RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 PYGO2Q9BRQ0 406 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 CABLES2Q9BTV7 478 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 SNRNP25Q9BV90 132 aaKnown RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 LRRC61Q9BV99 259 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 C1QTNF4Q9BXJ3 329 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 VN1R1Q9GZP7 353 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 NPFFR1Q9GZQ6 430 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 TMEM39BQ9GZU3 492 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 TMEM126AQ9H061 195 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 OR51I2Q9H344 312 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 MFSD1Q9H3U5 465 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 BANF2Q9H503 90 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 POMKQ9H5K3 350 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 REEP1Q9H902 201 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 MAP6D1Q9H9H5 199 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 CALHM2Q9HA72 323 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 UBTD1Q9HAC8 227 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 PNRC2Q9NPJ4 139 aaKnown RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 PRSS16Q9NQE7 514 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 HINT3Q9NQE9 182 aaKnown RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 MRPL17Q9NRX2 175 aaKnown RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 TMEM106BQ9NUM4 274 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 IL36AQ9UHA7 158 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 SIGLEC9Q9Y336 463 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 RPL36Q9Y3U8 105 aaKnown RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 YIPF1Q9Y548 306 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 MEGF6O75095 1541 aa2.76□□□□□ -1.97
VPS35-208ENST00000568612 COL2A1P02458 1487 aaPredicted RBP2.76□□□□□ -1.97
VPS35-208ENST00000568612 XIRP1Q702N8 1843 aaKnown RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 A0A1W2PPV9 198 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 A0A1W2PQF6 199 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 A0A1W2PRE2 83 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 ARRDC5A6NEK1 342 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 SLC22A20A6NK97 555 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 KRTAP29-1A8MX34 341 aaPredicted RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 FTCDNL1E5RQL4 147 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 ZNF354AO60765 605 aaPredicted RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 RAMP1O60894 148 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 CNMDO75829 334 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 TRAPPC6AO75865 159 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 PMS2P2O95744 297 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 GAPDHP04406 335 aaKnown RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 HSPB1P04792 205 aaKnown RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 ISG15P05161 165 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 C8orf88P0DMB2 117 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 LYL1P12980 280 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 TCN2P20062 427 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 USF1P22415 310 aaPredicted RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 PRPH2P23942 346 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 SRIP30626 198 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 ADRA1AP35348 466 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 CX3CR1P49238 355 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 ZNF83P51522 516 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 P2RX1P51575 399 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 POLR2JP52435 117 aaKnown RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 ZNF133P52736 654 aaPredicted RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 EFNA5P52803 228 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 PGGT1BP53609 377 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 MTPNP58546 118 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 TPPP2P59282 170 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 TAS2R31P59538 309 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 TAS2R20P59543 309 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 NANOS2P60321 138 aaKnown RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 YPEL3P61236 119 aaPredicted RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 GRB2P62993 217 aaKnown RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 RPL24P83731 157 aaKnown RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 PNRC1Q12796 327 aaPredicted RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 PPP1R8Q12972 351 aaKnown RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 ELAVL3Q14576 367 aaKnown RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 IL11RAQ14626 422 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 EXOSC7Q15024 291 aaKnown RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 DUSP5Q16690 384 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 SOHLH1Q5JUK2 328 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 SPATA31B1PQ5VZV4 182 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 AMMECR1LQ6DCA0 310 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 DGAT2L7PQ6IED9 249 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 SFXN4Q6P4A7 337 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 AGTRAPQ6RW13 159 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 UNQ6126/PRO20091Q6UXV3 157 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 ZNF621Q6ZSS3 439 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 SMIM5Q71RC9 77 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 COMMD6Q7Z4G1 85 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 CENPVQ7Z7K6 275 aaPredicted RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 TMPRSS11BQ86T26 416 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 ZNF429Q86V71 674 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 TMEM173Q86WV6 379 aaPredicted RBP2.75□□□□□ -1.97
VPS35-208ENST00000568612 ZNF595Q8IYB9 648 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 ZNF101Q8IZC7 436 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 CA13Q8N1Q1 262 aa2.75□□□□□ -1.97
VPS35-208ENST00000568612 MUC20Q8N307 709 aaPredicted RBP2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms