RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 C15orf65H3BRN8 121 aa12.31□□□□□ -0.44
CLK3-223ENST00000568488 NBR2O15453 112 aa12.31□□□□□ -0.44
CLK3-223ENST00000568488 SULT1C4O75897 302 aa12.31□□□□□ -0.44
CLK3-223ENST00000568488 ANXA8P13928 327 aa12.31□□□□□ -0.44
CLK3-223ENST00000568488 CRISP1P54107 249 aa12.31□□□□□ -0.44
CLK3-223ENST00000568488 NDPQ00604 133 aa12.31□□□□□ -0.44
CLK3-223ENST00000568488 SPATS1Q496A3 300 aa12.31□□□□□ -0.44
CLK3-223ENST00000568488 LCN12Q6JVE5 192 aa12.31□□□□□ -0.44
CLK3-223ENST00000568488 TCEANCQ8N8B7 351 aa12.31□□□□□ -0.44
CLK3-223ENST00000568488 SUMF2Q8NBJ7 301 aa12.31□□□□□ -0.44
CLK3-223ENST00000568488 OR10H4Q8NGA5 316 aa12.31□□□□□ -0.44
CLK3-223ENST00000568488 RHOVQ96L33 236 aa12.31□□□□□ -0.44
CLK3-223ENST00000568488 THAP7Q9BT49 309 aaPredicted RBP12.31□□□□□ -0.44
CLK3-223ENST00000568488 DPCDQ9BVM2 203 aaPredicted RBP12.31□□□□□ -0.44
CLK3-223ENST00000568488 RANGRFQ9HD47 186 aaPredicted RBP12.31□□□□□ -0.44
CLK3-223ENST00000568488 GNG8Q9UK08 70 aa12.31□□□□□ -0.44
CLK3-223ENST00000568488 TMEM30CPA0ZSE6 113 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 IZUMO1RA6ND01 250 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 TPPPO94811 219 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 MT-ND2P03891 347 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 OR2T7P0C7T2 308 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 RAP2AP10114 183 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 ZP3P21754 424 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 CD40LGP29965 261 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 ZNF134P52741 427 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 CD81P60033 236 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 PAX5Q02548 391 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 TMEM267Q0VDI3 215 aaPredicted RBP12.3□□□□□ -0.44
CLK3-223ENST00000568488 IL13RA2Q14627 380 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 KISS1Q15726 138 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 PIGYQ3MUY2 71 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 TP53I3Q53FA7 332 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 C19orf54Q5BKX5 351 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 CT45A1Q5HYN5 189 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 AADACL4Q5VUY2 407 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 NXNL2Q5VZ03 156 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 PYHIN1Q6K0P9 492 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 FAM220AQ7Z4H9 259 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 OR10V1Q8NGI7 309 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 OR9G4Q8NGQ1 327 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 OR13C3Q8NGS6 347 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 OR10K1Q8NGX5 313 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 CT45A3Q8NHU0 189 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 RGP1Q92546 391 aaPredicted RBP12.3□□□□□ -0.44
CLK3-223ENST00000568488 LRGUKQ96M69 825 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 ETAA1Q9NY74 926 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 GNG12Q9UBI6 72 aa12.3□□□□□ -0.44
CLK3-223ENST00000568488 ANKRD34BA5PLL1 514 aa12.29□□□□□ -0.44
CLK3-223ENST00000568488 NUPR2A6NF83 97 aa12.29□□□□□ -0.44
CLK3-223ENST00000568488 MNAT1P51948 309 aa12.29□□□□□ -0.44
CLK3-223ENST00000568488 ZNF137PP52743 207 aa12.29□□□□□ -0.44
CLK3-223ENST00000568488 PTGES3Q15185 160 aaKnown RBP12.29□□□□□ -0.44
CLK3-223ENST00000568488 ACTBL2Q562R1 376 aa12.29□□□□□ -0.44
CLK3-223ENST00000568488 ZNF660Q6AZW8 331 aaPredicted RBP12.29□□□□□ -0.44
CLK3-223ENST00000568488 Q8N402 240 aa12.29□□□□□ -0.44
CLK3-223ENST00000568488 DEFB125Q8N687 156 aa12.29□□□□□ -0.44
CLK3-223ENST00000568488 TCTEX1D1Q8N7M0 179 aa12.29□□□□□ -0.44
CLK3-223ENST00000568488 IL4I1Q96RQ9 567 aa12.29□□□□□ -0.44
CLK3-223ENST00000568488 ELAC2Q9BQ52 826 aaKnown RBP12.29□□□□□ -0.44
CLK3-223ENST00000568488 PRRG3Q9BZD7 231 aa12.29□□□□□ -0.44
CLK3-223ENST00000568488 FAM53CQ9NYF3 392 aa12.29□□□□□ -0.44
CLK3-223ENST00000568488 CNOT2Q9NZN8 540 aaKnown RBP12.29□□□□□ -0.44
CLK3-223ENST00000568488 ZNF581Q9P0T4 197 aa12.29□□□□□ -0.44
CLK3-223ENST00000568488 VPS13DQ5THJ4 4388 aa12.29□□□□□ -0.44
CLK3-223ENST00000568488 ORC5O43913 435 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 TRGV3P03979 118 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 ATP6V1E1P36543 226 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 SYNJ2BPP57105 145 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 PLGLAQ15195 96 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 ZNF691Q5VV52 312 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 ELP2Q6IA86 826 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 UNQ5815/PRO19632Q6UWF5 114 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 IL34Q6ZMJ4 242 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 GID4Q8IVV7 300 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 PRR18Q8N4B5 295 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 ZNF439Q8NDP4 499 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 OR51A4Q8NGJ6 313 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 OR2G2Q8NGZ5 317 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 NEURL2Q9BR09 285 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 NDE1Q9NXR1 346 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 FRRS1LQ9P0K9 344 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 RNF150Q9ULK6 438 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 NUBP2Q9Y5Y2 271 aa12.28□□□□□ -0.44
CLK3-223ENST00000568488 LANCL1O43813 399 aa12.27□□□□□ -0.45
CLK3-223ENST00000568488 OR7C1O76099 320 aaPredicted RBP12.27□□□□□ -0.45
CLK3-223ENST00000568488 HTR3BO95264 441 aa12.27□□□□□ -0.45
CLK3-223ENST00000568488 CX3CL1P78423 397 aa12.27□□□□□ -0.45
CLK3-223ENST00000568488 MS4A2Q01362 244 aa12.27□□□□□ -0.45
CLK3-223ENST00000568488 KLF5Q13887 457 aaPredicted RBP12.27□□□□□ -0.45
CLK3-223ENST00000568488 RSU1Q15404 277 aa12.27□□□□□ -0.45
CLK3-223ENST00000568488 Q3ZCU0 254 aa12.27□□□□□ -0.45
CLK3-223ENST00000568488 LPCAT4Q643R3 524 aa12.27□□□□□ -0.45
CLK3-223ENST00000568488 CEMP1Q6PRD7 247 aaPredicted RBP12.27□□□□□ -0.45
CLK3-223ENST00000568488 PPP1R27Q86WC6 154 aa12.27□□□□□ -0.45
CLK3-223ENST00000568488 TMEM163Q8TC26 289 aa12.27□□□□□ -0.45
CLK3-223ENST00000568488 NEK7Q8TDX7 302 aa12.27□□□□□ -0.45
CLK3-223ENST00000568488 GPER1Q99527 375 aa12.27□□□□□ -0.45
CLK3-223ENST00000568488 FAM103A1Q9BTL3 118 aaKnown RBP12.27□□□□□ -0.45
CLK3-223ENST00000568488 FBXL15Q9H469 300 aa12.27□□□□□ -0.45
CLK3-223ENST00000568488 SLA2Q9H6Q3 261 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms