RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 NQO2P16083 231 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 ATP6V0CP27449 155 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 BMI1P35226 326 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 ASCL1P50553 236 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 PKIAP61925 76 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 PSG4Q00888 419 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 HIKESHIQ53FT3 197 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 Q6ZPA2 131 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 NAXEQ8NCW5 288 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 UBE2J1Q9Y385 318 aaPredicted RBP11.35□□□□□ -0.59
VPS4A-204ENST00000566354 ATMQ13315 3056 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 SHANK1Q9Y566 2161 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 ZNF816-ZNF321PA0A0X1KG74 233 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 A0A1B0GV50 99 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 OR7C1O76099 320 aaPredicted RBP11.35□□□□□ -0.59
VPS4A-204ENST00000566354 B4GALT1P15291 398 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 GNRHRP30968 328 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 PCBD1P61457 104 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 RPS23P62266 143 aaKnown RBP11.35□□□□□ -0.59
VPS4A-204ENST00000566354 ZNF92Q03936 586 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 PLCXD3Q63HM9 321 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 Q6ZS49 121 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 ZNF695Q8IW36 515 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 PIGCQ92535 297 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 YPEL4Q96NS1 127 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 OR2H1Q9GZK4 316 aa11.35□□□□□ -0.59
VPS4A-204ENST00000566354 LYRM2Q9NU23 88 aaPredicted RBP11.35□□□□□ -0.59
VPS4A-204ENST00000566354 CHD8Q9HCK8 2581 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 IGSF23A1L1A6 192 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 PATE4P0C8F1 98 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 NTF4P34130 210 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 RND3P61587 244 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 PDCD1Q15116 288 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 HEPN1Q6WQI6 88 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 AAED1Q7RTV5 226 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 TMEM252Q8N6L7 170 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 BEND2Q8NDZ0 799 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 SLC7A10Q9NS82 523 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 KIAA1456Q9P272 454 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 KIAA1549Q9HCM3 1950 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 FAM90A10PA6NDY2 464 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 FAM90A18PA6NE21 464 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 FAM90A16PA6NEW6 464 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 FAM90A20PA6NIJ5 464 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 FAM90A8PA6NJQ4 464 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 FAM90A7PA6NKC0 464 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 ZNF724A8MTY0 619 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 FAM90A22PA8MWA6 464 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 FAM90A12PA8MX19 464 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 FAM90A5PA8MXJ8 464 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 FAM90A23PA8MXZ1 464 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 FAM90A15PP0C7V4 464 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 FAM90A13PP0C7W8 464 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 FAM90A14PP0C7W9 464 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 FAM90A24PP0C7X0 464 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 VAMP2P63027 116 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 CCL20P78556 96 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 SRSF7Q16629 238 aaKnown RBP eCLIP11.34□□□□□ -0.59
VPS4A-204ENST00000566354 SPSB3Q6PJ21 355 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 TBC1D26Q86UD7 250 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 ZFP62Q8NB50 900 aaPredicted RBP11.34□□□□□ -0.59
VPS4A-204ENST00000566354 MDS2Q8NDY4 140 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 OR2M7Q8NG81 312 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 GNPNAT1Q96EK6 184 aaPredicted RBP11.34□□□□□ -0.59
VPS4A-204ENST00000566354 FOXB1Q99853 325 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 GAL3ST2Q9H3Q3 398 aa11.34□□□□□ -0.59
VPS4A-204ENST00000566354 DNAJC13O75165 2243 aa11.33□□□□□ -0.59
VPS4A-204ENST00000566354 ZNF407Q9C0G0 2248 aa11.33□□□□□ -0.59
VPS4A-204ENST00000566354 DUXBA0A1W2PPF3 345 aa11.33□□□□□ -0.6
VPS4A-204ENST00000566354 CLEC18AA5D8T8 446 aa11.33□□□□□ -0.6
VPS4A-204ENST00000566354 ZNF716A6NP11 495 aa11.33□□□□□ -0.6
VPS4A-204ENST00000566354 ZNF732B4DXR9 585 aa11.33□□□□□ -0.6
VPS4A-204ENST00000566354 MKRN2OSH3BPM6 223 aa11.33□□□□□ -0.6
VPS4A-204ENST00000566354 RPL36A-HNRNPH2H7BZ11 118 aa11.33□□□□□ -0.6
VPS4A-204ENST00000566354 TK1P04183 234 aa11.33□□□□□ -0.6
VPS4A-204ENST00000566354 MMP9P14780 707 aa11.33□□□□□ -0.6
VPS4A-204ENST00000566354 ARG2P78540 354 aa11.33□□□□□ -0.6
VPS4A-204ENST00000566354 YRDCQ86U90 279 aaKnown RBP11.33□□□□□ -0.6
VPS4A-204ENST00000566354 CALHM1Q8IU99 346 aa11.33□□□□□ -0.6
VPS4A-204ENST00000566354 SELENOHQ8IZQ5 122 aaKnown RBP11.33□□□□□ -0.6
VPS4A-204ENST00000566354 ZNF611Q8N823 705 aa11.33□□□□□ -0.6
VPS4A-204ENST00000566354 CLEC18CQ8NCF0 446 aa11.33□□□□□ -0.6
VPS4A-204ENST00000566354 Q8NFD4 153 aa11.33□□□□□ -0.6
VPS4A-204ENST00000566354 ALKBH3Q96Q83 286 aaPredicted RBP11.33□□□□□ -0.6
VPS4A-204ENST00000566354 FAM173AQ9BQD7 235 aa11.33□□□□□ -0.6
VPS4A-204ENST00000566354 OR51B6Q9H340 312 aa11.33□□□□□ -0.6
VPS4A-204ENST00000566354 GSX1Q9H4S2 264 aaPredicted RBP11.33□□□□□ -0.6
VPS4A-204ENST00000566354 PARPBPQ9NWS1 579 aa11.33□□□□□ -0.6
VPS4A-204ENST00000566354 TNRC6AQ8NDV7 1962 aaKnown RBP11.33□□□□□ -0.6
VPS4A-204ENST00000566354 H3BQ15 152 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 TXNL1O43396 289 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 SSSCA1O60232 199 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 SP1P08047 785 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 OMGP23515 440 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 B3GALT5-AS1P59052 145 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 BAXQ07812 192 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 SPIN3Q5JUX0 258 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 SLC25A26Q70HW3 274 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 TGIF2LXQ8IUE1 241 aa11.32□□□□□ -0.6
VPS4A-204ENST00000566354 OR5C1Q8NGR4 320 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms