RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 HIST2H2BCQ6DN03 193 aa25.31■■□□□ 1.64
CTCF-203ENST00000566078 NLRC3Q7RTR2 1065 aa25.31■■□□□ 1.64
CTCF-203ENST00000566078 GIMAP1Q8WWP7 306 aa25.31■■□□□ 1.64
CTCF-203ENST00000566078 GALMQ96C23 342 aa25.31■■□□□ 1.64
CTCF-203ENST00000566078 NEIL1Q96FI4 390 aaPredicted RBP25.31■■□□□ 1.64
CTCF-203ENST00000566078 FXYD6Q9H0Q3 95 aa25.31■■□□□ 1.64
CTCF-203ENST00000566078 BARX1Q9HBU1 254 aaPredicted RBP25.31■■□□□ 1.64
CTCF-203ENST00000566078 C19orf12Q9NSK7 152 aa25.31■■□□□ 1.64
CTCF-203ENST00000566078 ANKRD17O75179 2603 aaKnown RBP25.31■■□□□ 1.64
CTCF-203ENST00000566078 A0A0B4J293 547 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 C15orf65H3BRN8 121 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 SPINT2O43291 252 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 PEX14O75381 377 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 AADACP22760 399 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 RPL31P62899 125 aaKnown RBP25.3■■□□□ 1.64
CTCF-203ENST00000566078 ZDHHC22Q8N966 263 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 BEX2Q9BXY8 128 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 BEX1Q9HBH7 125 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 hADV38S2A0JD32 116 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 NPIPB11E5RHQ5 1161 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 DIRAS3O95661 229 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 DHFRP00374 187 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 RAG2P55895 527 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 FXYD4P59646 89 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 HERV-K104P61576 105 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 TATDN3Q17R31 274 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 ZNF841Q6ZN19 808 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 RFESDQ8TAC1 157 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 PERPQ96FX8 193 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 CALYQ9NYX4 217 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 OPN4Q9UHM6 478 aa25.3■■□□□ 1.64
CTCF-203ENST00000566078 HSPA12AO43301 675 aa25.29■■□□□ 1.64
CTCF-203ENST00000566078 PPYP01298 95 aa25.29■■□□□ 1.64
CTCF-203ENST00000566078 ANXA7P20073 488 aaKnown RBP25.29■■□□□ 1.64
CTCF-203ENST00000566078 FPR2P25090 351 aa25.29■■□□□ 1.64
CTCF-203ENST00000566078 MEF2CQ06413 473 aaPredicted RBP25.29■■□□□ 1.64
CTCF-203ENST00000566078 BAMBIQ13145 260 aa25.29■■□□□ 1.64
CTCF-203ENST00000566078 TMED4Q7Z7H5 227 aa25.29■■□□□ 1.64
CTCF-203ENST00000566078 ZNF69Q9UC07 566 aa25.29■■□□□ 1.64
CTCF-203ENST00000566078 LINC00312Q9Y6C7 94 aa25.29■■□□□ 1.64
CTCF-203ENST00000566078 WNT2P09544 360 aa25.28■■□□□ 1.64
CTCF-203ENST00000566078 PGAM2P15259 253 aa25.28■■□□□ 1.64
CTCF-203ENST00000566078 ECI1P42126 302 aa25.28■■□□□ 1.64
CTCF-203ENST00000566078 H1FOOQ8IZA3 346 aaPredicted RBP25.28■■□□□ 1.64
CTCF-203ENST00000566078 TOMM40LQ969M1 308 aa25.28■■□□□ 1.64
CTCF-203ENST00000566078 MOB3AQ96BX8 217 aa25.28■■□□□ 1.64
CTCF-203ENST00000566078 PATZ1Q9HBE1 687 aaKnown RBP25.28■■□□□ 1.64
CTCF-203ENST00000566078 FAM172BPA6NC97 362 aa25.27■■□□□ 1.64
CTCF-203ENST00000566078 PAX1P15863 534 aa25.27■■□□□ 1.64
CTCF-203ENST00000566078 FAM185AQ8N0U4 392 aa25.27■■□□□ 1.64
CTCF-203ENST00000566078 CORO2AQ92828 525 aa25.27■■□□□ 1.64
CTCF-203ENST00000566078 BPESC1Q9GZL8 116 aa25.27■■□□□ 1.64
CTCF-203ENST00000566078 LPAR3Q9UBY5 353 aa25.27■■□□□ 1.64
CTCF-203ENST00000566078 UBE2J1Q9Y385 318 aaPredicted RBP25.27■■□□□ 1.64
CTCF-203ENST00000566078 ALG5Q9Y673 324 aa25.27■■□□□ 1.64
CTCF-203ENST00000566078 TUSC2O75896 110 aa25.26■■□□□ 1.63
CTCF-203ENST00000566078 CGB3P0DN86 165 aa25.26■■□□□ 1.63
CTCF-203ENST00000566078 CGB7P0DN87 165 aa25.26■■□□□ 1.63
CTCF-203ENST00000566078 ZBTB25P24278 435 aa25.26■■□□□ 1.63
CTCF-203ENST00000566078 ZNF273Q14593 569 aa25.26■■□□□ 1.63
CTCF-203ENST00000566078 C17orf58Q2M2W7 97 aa25.26■■□□□ 1.63
CTCF-203ENST00000566078 OR52L2PQ8NGH6 319 aa25.26■■□□□ 1.63
CTCF-203ENST00000566078 SCGB3A2Q96PL1 93 aa25.26■■□□□ 1.63
CTCF-203ENST00000566078 CLN8Q9UBY8 286 aa25.26■■□□□ 1.63
CTCF-203ENST00000566078 ZNF729A6NN14 1252 aaPredicted RBP25.26■■□□□ 1.63
CTCF-203ENST00000566078 F5H0A9 414 aaPredicted RBP25.26■■□□□ 1.63
CTCF-203ENST00000566078 MECP2P51608 486 aaKnown RBP25.26■■□□□ 1.63
CTCF-203ENST00000566078 SURF2Q15527 256 aaPredicted RBP25.26■■□□□ 1.63
CTCF-203ENST00000566078 LTC4SQ16873 150 aa25.26■■□□□ 1.63
CTCF-203ENST00000566078 RAB9BQ9NP90 201 aa25.26■■□□□ 1.63
CTCF-203ENST00000566078 GPR132Q9UNW8 380 aa25.26■■□□□ 1.63
CTCF-203ENST00000566078 NBPF19A0A087WUL8 3843 aa25.25■■□□□ 1.63
CTCF-203ENST00000566078 PTPN13Q12923 2485 aa25.25■■□□□ 1.63
CTCF-203ENST00000566078 IGHV3-43A0A0B4J1X8 118 aa25.25■■□□□ 1.63
CTCF-203ENST00000566078 KBTBD11-OT1A0A1B0GTJ5 212 aa25.25■■□□□ 1.63
CTCF-203ENST00000566078 ZNF728P0DKX0 622 aa25.25■■□□□ 1.63
CTCF-203ENST00000566078 IGHV3-43DP0DP04 118 aa25.25■■□□□ 1.63
CTCF-203ENST00000566078 GNMTQ14749 295 aa25.25■■□□□ 1.63
CTCF-203ENST00000566078 WDR25Q64LD2 544 aaPredicted RBP25.25■■□□□ 1.63
CTCF-203ENST00000566078 FAM168AQ92567 244 aa25.25■■□□□ 1.63
CTCF-203ENST00000566078 GSX2Q9BZM3 304 aa25.25■■□□□ 1.63
CTCF-203ENST00000566078 RDH8Q9NYR8 311 aa25.25■■□□□ 1.63
CTCF-203ENST00000566078 MALRD1Q5VYJ5 2156 aa25.24■■□□□ 1.63
CTCF-203ENST00000566078 HEXAP06865 529 aa25.24■■□□□ 1.63
CTCF-203ENST00000566078 VSIG10L2P0DP72 767 aa25.24■■□□□ 1.63
CTCF-203ENST00000566078 CEACAM6P40199 344 aa25.24■■□□□ 1.63
CTCF-203ENST00000566078 HTD2P86397 168 aa25.24■■□□□ 1.63
CTCF-203ENST00000566078 TMEM200BQ69YZ2 307 aa25.24■■□□□ 1.63
CTCF-203ENST00000566078 NINJ1Q92982 152 aa25.24■■□□□ 1.63
CTCF-203ENST00000566078 DACT3Q96B18 629 aaPredicted RBP25.24■■□□□ 1.63
CTCF-203ENST00000566078 PIMREGQ9BSJ6 248 aa25.24■■□□□ 1.63
CTCF-203ENST00000566078 OR2S2Q9NQN1 319 aa25.24■■□□□ 1.63
CTCF-203ENST00000566078 OR2W1Q9Y3N9 320 aa25.24■■□□□ 1.63
CTCF-203ENST00000566078 TRBV23-1A0A0A0MS06 115 aa25.23■■□□□ 1.63
CTCF-203ENST00000566078 F2RL2O00254 374 aa25.23■■□□□ 1.63
CTCF-203ENST00000566078 GPR37O15354 613 aa25.23■■□□□ 1.63
CTCF-203ENST00000566078 PI3P19957 117 aa25.23■■□□□ 1.63
CTCF-203ENST00000566078 OMGP23515 440 aa25.23■■□□□ 1.63
CTCF-203ENST00000566078 FAM53AQ6NSI3 398 aaPredicted RBP25.23■■□□□ 1.63
CTCF-203ENST00000566078 CLEC2AQ6UVW9 174 aa25.23■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms