RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 MCRIP1C9JLW8 97 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 PTGES3LE9PB15 166 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 H0YHG0 523 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 AIPO00170 330 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 HSD17B6O14756 317 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 SLC31A2O15432 143 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 RCC1P18754 421 aaPredicted RBP11.78□□□□□ -0.52
CLN3-213ENST00000565047 ZNF137PP52743 207 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 AQP4P55087 323 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 QRFPP83859 136 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 GPR50Q13585 617 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 SPHARQ15513 63 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 OXLD1Q5BKU9 147 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 AWAT2Q6E213 333 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 SLC25A48Q6ZT89 311 aaKnown RBP11.78□□□□□ -0.52
CLN3-213ENST00000565047 CENPVQ7Z7K6 275 aaPredicted RBP11.78□□□□□ -0.52
CLN3-213ENST00000565047 MS4A15Q8N5U1 240 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 OR4F17Q8NGA8 305 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 THRSPQ92748 146 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 R3HDM4Q96D70 268 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 OR4F4Q96R69 305 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 MND1Q9BWT6 205 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 SELENOIQ9C0D9 397 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 PLSCR3Q9NRY6 295 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 ETAA1Q9NY74 926 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 GHRLQ9UBU3 117 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 PEX16Q9Y5Y5 336 aa11.78□□□□□ -0.52
CLN3-213ENST00000565047 IGHV3-43A0A0B4J1X8 118 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 CCRL2O00421 344 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 SDCBPO00560 298 aaPredicted RBP11.77□□□□□ -0.53
CLN3-213ENST00000565047 FGF16O43320 207 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 CA11O75493 328 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 IGKV1D-33P01593 117 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 IGKV1-33P01594 117 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 IGHV3-43DP0DP04 118 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 VSIG8P0DPA2 414 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 FUT3P21217 361 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 MAPK3P27361 379 aaPredicted RBP11.77□□□□□ -0.53
CLN3-213ENST00000565047 CT45A1Q5HYN5 189 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 TMEM91Q6ZNR0 172 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 C5orf24Q7Z6I8 188 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 IZUMO1Q8IYV9 350 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 OR10X1Q8NGY0 326 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 OR4K15Q8NH41 348 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 OR1L1Q8NH94 360 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 CT45A3Q8NHU0 189 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 RTN4IP1Q8WWV3 396 aaPredicted RBP11.77□□□□□ -0.53
CLN3-213ENST00000565047 PHYHIPQ92561 330 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 MYDGFQ969H8 173 aa11.77□□□□□ -0.53
CLN3-213ENST00000565047 EAF1Q96JC9 268 aaPredicted RBP11.77□□□□□ -0.53
CLN3-213ENST00000565047 PEX14O75381 377 aa11.76□□□□□ -0.53
CLN3-213ENST00000565047 CRTAPO75718 401 aaPredicted RBP11.76□□□□□ -0.53
CLN3-213ENST00000565047 IGHG2P01859 326 aa11.76□□□□□ -0.53
CLN3-213ENST00000565047 HBZP02008 142 aa11.76□□□□□ -0.53
CLN3-213ENST00000565047 GAPDHP04406 335 aaKnown RBP11.76□□□□□ -0.53
CLN3-213ENST00000565047 UCHL1P09936 223 aa11.76□□□□□ -0.53
CLN3-213ENST00000565047 TMEM11P17152 192 aa11.76□□□□□ -0.53
CLN3-213ENST00000565047 MYF6P23409 242 aa11.76□□□□□ -0.53
CLN3-213ENST00000565047 REG1BP48304 166 aa11.76□□□□□ -0.53
CLN3-213ENST00000565047 GABPB1Q06547 395 aaPredicted RBP11.76□□□□□ -0.53
CLN3-213ENST00000565047 ARSJQ5FYB0 599 aaPredicted RBP11.76□□□□□ -0.53
CLN3-213ENST00000565047 Q6ZPA2 131 aa11.76□□□□□ -0.53
CLN3-213ENST00000565047 GFI1Q99684 422 aa11.76□□□□□ -0.53
CLN3-213ENST00000565047 ANKRD60Q9BZ19 345 aa11.76□□□□□ -0.53
CLN3-213ENST00000565047 VCXQ9H320 206 aa11.76□□□□□ -0.53
CLN3-213ENST00000565047 TSSC4Q9Y5U2 329 aaPredicted RBP11.76□□□□□ -0.53
CLN3-213ENST00000565047 NOTCH3Q9UM47 2321 aa11.76□□□□□ -0.53
CLN3-213ENST00000565047 DNAH9Q9NYC9 4486 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 LINC01548A6NM66 108 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 ZNF736B4DX44 427 aaPredicted RBP11.75□□□□□ -0.53
CLN3-213ENST00000565047 SLC22A1O15245 554 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 PDCD6O75340 191 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 SRMP19623 302 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 CHATP28329 748 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 UNC119Q13432 240 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 TPBGQ13641 420 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 TMEM30BQ3MIR4 351 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 STEAP3Q658P3 488 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 OR10K2Q6IF99 312 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 ZNF554Q86TJ5 538 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 ODF3L1Q8IXM7 274 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 Q8N9W7 124 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 MRPL30Q8TCC3 161 aaKnown RBP11.75□□□□□ -0.53
CLN3-213ENST00000565047 NEK7Q8TDX7 302 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 FAM46BQ96A09 425 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 RBMXL1Q96E39 390 aaKnown RBP11.75□□□□□ -0.53
CLN3-213ENST00000565047 TMED9Q9BVK6 235 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 TM2D1Q9BX74 207 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 TRAPPC2LQ9UL33 140 aa11.75□□□□□ -0.53
CLN3-213ENST00000565047 IGHV3-72A0A0B4J1Y9 119 aa11.74□□□□□ -0.53
CLN3-213ENST00000565047 A0A1W2PRX2 142 aa11.74□□□□□ -0.53
CLN3-213ENST00000565047 TCRBV4S1A1TA0A5B7 111 aa11.74□□□□□ -0.53
CLN3-213ENST00000565047 UBE2QL1A1L167 161 aa11.74□□□□□ -0.53
CLN3-213ENST00000565047 TMEM14DPA8MWL7 114 aa11.74□□□□□ -0.53
CLN3-213ENST00000565047 PRB2P02812 416 aaPredicted RBP11.74□□□□□ -0.53
CLN3-213ENST00000565047 UBBP0CG47 229 aa11.74□□□□□ -0.53
CLN3-213ENST00000565047 HTR2CP28335 458 aa11.74□□□□□ -0.53
CLN3-213ENST00000565047 CD1BP29016 333 aa11.74□□□□□ -0.53
CLN3-213ENST00000565047 RPS27AP62979 156 aaKnown RBP11.74□□□□□ -0.53
CLN3-213ENST00000565047 HNF4GQ14541 408 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms