RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 LRTM1Q9HBL6 345 aa4.1□□□□□ -1.75
VPS35P1-201ENST00000563400 CMTM6Q9NX76 183 aa4.1□□□□□ -1.75
VPS35P1-201ENST00000563400 ENOPH1Q9UHY7 261 aa4.1□□□□□ -1.75
VPS35P1-201ENST00000563400 KLHL21Q9UJP4 597 aa4.1□□□□□ -1.75
VPS35P1-201ENST00000563400 KLK13Q9UKR3 277 aa4.1□□□□□ -1.75
VPS35P1-201ENST00000563400 ZNF106Q9H2Y7 1883 aaKnown RBP4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 PCM1Q15154 2024 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 LRRK1Q38SD2 2015 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 IGLV3-12A0A075B6K2 115 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 IGLV1-36A0A0B4J1U3 117 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 A0A1W2PRG6 482 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 A6NDN8 102 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 METTL15A6NJ78 407 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 CLDN24A6NM45 220 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 EVPLLA8MZ36 301 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 C16orf97H3BN30 126 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 MANBAO00462 879 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 TAAR5O14804 337 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 CHST10O43529 356 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 VENTXO95231 258 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 GPR75O95800 540 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 CLDN1O95832 211 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 C1QAP02745 245 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 MT-ND4P03905 459 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 SERPINA7P05543 415 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 CST2P09228 141 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 HOXB6P17509 224 aaKnown RBP4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 ALOX5APP20292 161 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 PPICP45877 212 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 NANOS3P60323 173 aaKnown RBP4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 RPL32P62910 135 aaKnown RBP4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 CACNG7P62955 275 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 HPCAP84074 193 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 OR2F1Q13607 317 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 SLC25A35Q3KQZ1 300 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 TNFAIP8L3Q5GJ75 292 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 KCTD16Q68DU8 428 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 BAIAP2L2Q6UXY1 529 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 COMMD7Q86VX2 200 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 C9orf40Q8IXQ3 194 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 CIARTQ8N365 385 aaPredicted RBP4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 CLDN22Q8N7P3 220 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 GATD1Q8NB37 220 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 OR51D1Q8NGF3 324 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 OR10G7Q8NGN6 311 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 TWIST2Q8WVJ9 160 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 TMEM230Q96A57 120 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 PPCDCQ96CD2 204 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 TAPBPLQ9BX59 468 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 FAM60AQ9NP50 221 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 TMEM100Q9NV29 134 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 CALML5Q9NZT1 146 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 SLC7A11Q9UPY5 501 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 ZNF257Q9Y2Q1 563 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 RNF11Q9Y3C5 154 aa4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 PCYT1BQ9Y5K3 369 aaPredicted RBP4.09□□□□□ -1.75
VPS35P1-201ENST00000563400 EYSQ5T1H1 3165 aa4.09□□□□□ -1.76
VPS35P1-201ENST00000563400 SPTBN5Q9NRC6 3674 aaKnown RBP4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 TRAV17A0A0B4J275 112 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 ZNF729A6NN14 1252 aaPredicted RBP4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 F5H5K5 113 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 PIAS1O75925 651 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 PDYNP01213 254 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 IFNA21P01568 189 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 IL1RNP18510 177 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 FKBP2P26885 142 aaKnown RBP4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 ELK4P28324 431 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 S100A3P33764 101 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 MYCNOSP40205 109 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 RPL5P46777 297 aaKnown RBP4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 RIDAP52758 137 aaKnown RBP4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 FMODQ06828 376 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 KRTAP15-1Q3LI76 137 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 CCSMST1Q4G0I0 132 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 FAM182AQ5T1J6 154 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 NOXRED1Q6NXP6 359 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 PCSK4Q6UW60 755 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 FAM231DQ6ZW35 169 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 NIT1Q86X76 327 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 LRRC25Q8N386 305 aaPredicted RBP4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 CBR4Q8N4T8 237 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 RFLNBQ8N5W9 214 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 STOML3Q8TAV4 291 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 C16orf78Q8WTQ4 265 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 OR2V2Q96R30 315 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 OR4K3Q96R72 315 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 F2RL3Q96RI0 385 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 DHCR7Q9UBM7 475 aaKnown RBP4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 VAX2Q9UIW0 290 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 ANXA10Q9UJ72 324 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 REV3LO60673 3130 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 ADAMTS9Q9P2N4 1935 aa4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 ZFC3H1O60293 1989 aaKnown RBP4.08□□□□□ -1.76
VPS35P1-201ENST00000563400 DOCK9Q9BZ29 2069 aa4.07□□□□□ -1.76
VPS35P1-201ENST00000563400 GMNCA6NCL1 334 aa4.07□□□□□ -1.76
VPS35P1-201ENST00000563400 DNAJC9-AS1A6NH13 148 aa4.07□□□□□ -1.76
VPS35P1-201ENST00000563400 C12orf77C9JDV5 145 aa4.07□□□□□ -1.76
VPS35P1-201ENST00000563400 PRAC2D3DTV9 90 aa4.07□□□□□ -1.76
VPS35P1-201ENST00000563400 MFNGO00587 321 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 123.1 ms