RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 CD40LGP29965 261 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 KIR2DS4P43632 304 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 PPP5CP53041 499 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 DVL1P1P54792 670 aaPredicted RBP13.61□□□□□ -0.23
VPS4A-202ENST00000562754 ACTBP60709 375 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 ARF6P62330 175 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 ACTG1P63261 375 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 SSBP1Q04837 148 aaKnown RBP13.61□□□□□ -0.23
VPS4A-202ENST00000562754 KIR2DS1Q14954 304 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 UTF1Q5T230 341 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 FAM53AQ6NSI3 398 aaPredicted RBP13.61□□□□□ -0.23
VPS4A-202ENST00000562754 SPNS3Q6ZMD2 512 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 LYSMD2Q8IV50 215 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 PRR18Q8N4B5 295 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 KIRREL1Q96J84 757 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 DMRTB1Q96MA1 342 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 CABLES2Q9BTV7 478 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 SIRPDQ9H106 197 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 HIF1ANQ9NWT6 349 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 ANXA10Q9UJ72 324 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 ZANQ9Y493 2812 aa13.61□□□□□ -0.23
VPS4A-202ENST00000562754 A0A1W2PPH5 198 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 M0R1W7 72 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 F2RL2O00254 374 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 SPINT2O43291 252 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 IL7P13232 177 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 HLA-DMAP28067 261 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 DLX1P56177 255 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 PAX8Q06710 450 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 GNMTQ14749 295 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 LTC4SQ16873 150 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 IGSF11Q5DX21 431 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 CSPG4Q6UVK1 2322 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 BTNL3Q6UXE8 466 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 HEPN1Q6WQI6 88 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 GLCCI1Q86VQ1 547 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 OR4A4PQ8NGN8 299 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 CCDC32Q9BV29 185 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 IDI2-AS1Q9NZ38 188 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 KPTNQ9Y664 436 aa13.6□□□□□ -0.23
VPS4A-202ENST00000562754 IGHV3-43A0A0B4J1X8 118 aa13.59□□□□□ -0.23
VPS4A-202ENST00000562754 ANKRD20A5PA0PJZ0 165 aa13.59□□□□□ -0.23
VPS4A-202ENST00000562754 TGFAP01135 160 aa13.59□□□□□ -0.23
VPS4A-202ENST00000562754 RBP4P02753 201 aa13.59□□□□□ -0.23
VPS4A-202ENST00000562754 IGHV1-8P0DP01 117 aa13.59□□□□□ -0.23
VPS4A-202ENST00000562754 IGHV3-43DP0DP04 118 aa13.59□□□□□ -0.23
VPS4A-202ENST00000562754 MMP9P14780 707 aa13.59□□□□□ -0.23
VPS4A-202ENST00000562754 FPR2P25090 351 aa13.59□□□□□ -0.23
VPS4A-202ENST00000562754 LOXL3P58215 753 aa13.59□□□□□ -0.23
VPS4A-202ENST00000562754 PRB3Q04118 309 aaPredicted RBP13.59□□□□□ -0.23
VPS4A-202ENST00000562754 KLF9Q13886 244 aaPredicted RBP13.59□□□□□ -0.23
VPS4A-202ENST00000562754 DCAF12L2Q5VW00 463 aa13.59□□□□□ -0.23
VPS4A-202ENST00000562754 CYB5R2Q6BCY4 276 aa13.59□□□□□ -0.23
VPS4A-202ENST00000562754 ZNF782Q6ZMW2 699 aaPredicted RBP13.59□□□□□ -0.23
VPS4A-202ENST00000562754 OR52L2PQ8NGH6 319 aa13.59□□□□□ -0.23
VPS4A-202ENST00000562754 IL1F10Q8WWZ1 152 aa13.59□□□□□ -0.23
VPS4A-202ENST00000562754 TBX15Q96SF7 602 aa13.59□□□□□ -0.23
VPS4A-202ENST00000562754 OR1A1Q9P1Q5 309 aa13.59□□□□□ -0.23
VPS4A-202ENST00000562754 FAM172BPA6NC97 362 aa13.58□□□□□ -0.24
VPS4A-202ENST00000562754 M0QYG6 137 aa13.58□□□□□ -0.24
VPS4A-202ENST00000562754 CD3DP04234 171 aa13.58□□□□□ -0.24
VPS4A-202ENST00000562754 HRH1P35367 487 aa13.58□□□□□ -0.24
VPS4A-202ENST00000562754 ARPC4P59998 168 aa13.58□□□□□ -0.24
VPS4A-202ENST00000562754 CHRFAM7AQ494W8 412 aa13.58□□□□□ -0.24
VPS4A-202ENST00000562754 TRIQKQ629K1 86 aa13.58□□□□□ -0.24
VPS4A-202ENST00000562754 TMEM229BQ8NBD8 167 aa13.58□□□□□ -0.24
VPS4A-202ENST00000562754 OR5AP2Q8NGF4 316 aa13.58□□□□□ -0.24
VPS4A-202ENST00000562754 GALMQ96C23 342 aa13.58□□□□□ -0.24
VPS4A-202ENST00000562754 SIRT7Q9NRC8 400 aa13.58□□□□□ -0.24
VPS4A-202ENST00000562754 GFOD1Q9NXC2 390 aa13.58□□□□□ -0.24
VPS4A-202ENST00000562754 ZNF107Q9UII5 783 aaPredicted RBP13.58□□□□□ -0.24
VPS4A-202ENST00000562754 SESN1Q9Y6P5 492 aa13.58□□□□□ -0.24
VPS4A-202ENST00000562754 TLN2Q9Y4G6 2542 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 TRBV6-7A0A0A0MS04 114 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 ZNF736B4DX44 427 aaPredicted RBP13.57□□□□□ -0.24
VPS4A-202ENST00000562754 SDCBPO00560 298 aaPredicted RBP13.57□□□□□ -0.24
VPS4A-202ENST00000562754 BET1O15155 118 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 PMP2P02689 132 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 CD74P04233 296 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 CSF1P09603 554 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 NFYBP25208 207 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 TAS2R46P59540 309 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 TAS2R19P59542 299 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 HTD2P86397 168 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 CDK10Q15131 360 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 METTL11BQ5VVY1 283 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 C1orf122Q6ZSJ8 110 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 VMO1Q7Z5L0 202 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 OR10A7Q8NGE5 316 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 OR4D10Q8NGI6 311 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 OR10V1Q8NGI7 309 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 OR5H2Q8NGV7 314 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 TNFRSF14Q92956 283 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 C18orf12Q96KH6 178 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 SUCNR1Q9BXA5 334 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 TMPRSS13Q9BYE2 586 aa13.57□□□□□ -0.24
VPS4A-202ENST00000562754 TINAGL1Q9GZM7 467 aaPredicted RBP13.57□□□□□ -0.24
VPS4A-202ENST00000562754 PARP12Q9H0J9 701 aaKnown RBP13.57□□□□□ -0.24
VPS4A-202ENST00000562754 METTL8Q9H825 291 aaKnown RBP13.57□□□□□ -0.24
VPS4A-202ENST00000562754 UNKLQ9H9P5 680 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms