RNA–Protein interactions for RNA: ENST00000561076.1

RTF1-207, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 314 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-207ENST00000561076 BMFQ96LC9 184 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 ZNF778Q96MU6 729 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 OLFM3Q96PB7 478 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 PFDN5Q99471 154 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 TBX5Q99593 518 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 CDX2Q99626 313 aaPredicted RBP1.54□□□□□ -2.16
RTF1-207ENST00000561076 GINS3Q9BRX5 216 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 MARVELD1Q9BSK0 173 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 C11orf49Q9H6J7 331 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 GNB4Q9HAV0 340 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 PRTFDC1Q9NRG1 225 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 INIPQ9NRY2 104 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 GSKIPQ9P0R6 139 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 TAC3Q9UHF0 121 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 VPREB3Q9UKI3 123 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 GINS2Q9Y248 185 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 ERGIC3Q9Y282 383 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 PKIGQ9Y2B9 76 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 YTHDF2Q9Y5A9 579 aaKnown RBP1.54□□□□□ -2.16
RTF1-207ENST00000561076 F11RQ9Y624 299 aaKnown RBP1.54□□□□□ -2.16
RTF1-207ENST00000561076 PXMP4Q9Y6I8 212 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 TONSLQ96HA7 1378 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 PTPRTO14522 1441 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 NUP160Q12769 1436 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 CD109Q6YHK3 1445 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 IQSEC2Q5JU85 1478 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 TARBP1Q13395 1621 aaKnown RBP1.54□□□□□ -2.16
RTF1-207ENST00000561076 KIF13AQ9H1H9 1805 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 TSPOAP1O95153 1857 aa1.54□□□□□ -2.16
RTF1-207ENST00000561076 IGLV11-55A0A075B6I3 123 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 IGLV1-50A0A075B6I6 118 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 A0A0J9YWU9 116 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 WI2-2373I1.2A0A1W2PRP0 233 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 hADV38S2A0JD32 116 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 PLAC8L1A1L4L8 177 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 MYBPHLA2RUH7 354 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 CCDC144AA2RUR9 1427 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 CCDC88BA6NC98 1476 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 MAP1LC3B2A6NCE7 125 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 RTL1A6NKG5 1358 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 FAM159BA6NKW6 160 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 KNCNA6PVL3 124 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 KRBOX1C9JBD0 128 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 H7C1C5 153 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 H7C423 109 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 DNASE2O00115 360 aaPredicted RBP1.53□□□□□ -2.16
RTF1-207ENST00000561076 GYG2O15488 501 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 PI15O43692 258 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 EDIL3O43854 480 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 CLUHO75153 1309 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 NPIPB7O75200 414 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 DEDDO75618 318 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 ZNF432O94892 652 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 WIZO95785 1651 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 IGHV3-23P01764 117 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 AMBPP02760 352 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 TTRP02766 147 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 HSPB1P04792 205 aaKnown RBP1.53□□□□□ -2.16
RTF1-207ENST00000561076 SERPINE1P05121 402 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 OR56A5P0C7T3 313 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 GLI2P10070 1586 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 ADRB3P13945 408 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 CTSEP14091 401 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 OMGP23515 440 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 IL3RAP26951 378 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 GABRA3P34903 492 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 ACVRL1P37023 503 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 CXCL5P42830 114 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 MAP2K4P45985 399 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 EMP1P54849 157 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 TMEM33P57088 247 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 LINC00205P59089 165 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 PFN3P60673 137 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 LCN6P62502 163 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 RHOBP62745 196 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 TRIP12Q14669 1992 aaPredicted RBP1.53□□□□□ -2.16
RTF1-207ENST00000561076 JOSD1Q15040 202 aaPredicted RBP1.53□□□□□ -2.16
RTF1-207ENST00000561076 RHEBQ15382 184 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 GRK1Q15835 563 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 TEX30Q5JUR7 227 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 FAM201AQ5SY85 155 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 ATAD3CQ5T2N8 411 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 KDM4DQ6B0I6 523 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 LCN8Q6JVE9 175 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 LPCAT3Q6P1A2 487 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 CYHR1Q6ZMK1 362 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 ACP7Q6ZNF0 438 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 ZNF497Q6ZNH5 498 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 RFLNAQ6ZTI6 216 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 ZNF550Q7Z398 422 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 NEGR1Q7Z3B1 354 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 GLT6D1Q7Z4J2 308 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 SMIM29Q86T20 159 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 PBRM1Q86U86 1689 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 PHF13Q86YI8 300 aaPredicted RBP1.53□□□□□ -2.16
RTF1-207ENST00000561076 TMEM256Q8N2U0 113 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 ZNF561Q8N587 486 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 ZDHHC22Q8N966 263 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 OR13D1Q8NGV5 346 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 OR4X1Q8NH49 305 aa1.53□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms