RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 RFT1Q96AA3 541 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 NEDD4LQ96PU5 975 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 TM2D1Q9BX74 207 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 SRRQ9GZT4 340 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 EGLN1Q9GZT9 426 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 SIRPDQ9H106 197 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 MIXL1Q9H2W2 232 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 Q9H8V8 135 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 ABCB10Q9NRK6 738 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 RASL12Q9NYN1 266 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 SHANK1Q9Y566 2161 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 ANK2Q01484 3957 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 CUBNO60494 3623 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 DOCK10Q96BY6 2186 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 IGLV3-9A0A075B6K5 115 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 TRAV18A0A075B6X5 111 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 A6NIN4 97 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 J3QT63 122 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 L7N2F9 121 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 ABCD4O14678 606 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 LMX1BO60663 402 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 NOS1APO75052 506 aaPredicted RBP4.29□□□□□ -1.72
LDLR-209ENST00000558528 CRTAPO75718 401 aaPredicted RBP4.29□□□□□ -1.72
LDLR-209ENST00000558528 PTTG1O95997 202 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 HLA-DQB1P01920 261 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 EIF4EP06730 217 aaKnown RBP4.29□□□□□ -1.72
LDLR-209ENST00000558528 RRASP10301 218 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 MGMTP16455 207 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 TBPP20226 339 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 CA6P23280 308 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 CDK2P24941 298 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 RCVRNP35243 200 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 HAAOP46952 286 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 CLDN12P56749 244 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 TAS2R20P59543 309 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 ZP1P60852 638 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 FGF12P61328 243 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 RPS27AP62979 156 aaKnown RBP4.29□□□□□ -1.72
LDLR-209ENST00000558528 RBM39Q14498 530 aaKnown RBP4.29□□□□□ -1.72
LDLR-209ENST00000558528 EFNB3Q15768 340 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 TRIM16LQ309B1 348 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 SLC22A6Q4U2R8 563 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 ACTBL2Q562R1 376 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 NHLRC3Q5JS37 347 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 NCMAPQ5T1S8 102 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 ZNF57Q68EA5 555 aaPredicted RBP4.29□□□□□ -1.72
LDLR-209ENST00000558528 ASPHD2Q6ICH7 369 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 Q75L30 129 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 FOXRED2Q8IWF2 684 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 FAM89BQ8N5H3 189 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 CHST4Q8NCG5 386 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 OR10R2Q8NGX6 335 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 OR10Z1Q8NGY1 313 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 CHPT1Q8WUD6 406 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 SMIM4Q8WVI0 70 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 RAB3CQ96E17 227 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 WFIKKN1Q96NZ8 548 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 GAL3ST1Q99999 423 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 ADAT1Q9BUB4 502 aaKnown RBP4.29□□□□□ -1.72
LDLR-209ENST00000558528 MLST8Q9BVC4 326 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 RIMS4Q9H426 269 aaPredicted RBP4.29□□□□□ -1.72
LDLR-209ENST00000558528 MAP6D1Q9H9H5 199 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 CA10Q9NS85 328 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 FAIMQ9NVQ4 179 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 PLEKHJ1Q9NW61 149 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 COPZ2Q9P299 210 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 MGAT4AQ9UM21 535 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 V9GYH0 126 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 NOTCH1P46531 2555 aa4.29□□□□□ -1.72
LDLR-209ENST00000558528 A0A0G2JMP0 313 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 A0A0X1KG70 313 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 DPRXA6NFQ7 191 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 LRRC30A6NM36 301 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 MCRIP1C9JLW8 97 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 PRSS46E5RG02 174 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 H7C417 338 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 J3QRK9 145 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 K7EQM0 130 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 SH2D1BO14796 132 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 CLN5O75503 358 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 GAGE7O76087 117 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 FGF2P09038 288 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 GAGE12FP0CL80 117 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 GAGE12GP0CL81 117 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 GAGE12IP0CL82 117 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 IL7P13232 177 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 SERPINA2P20848 420 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 FUT3P21217 361 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 BLVRBP30043 206 aaPredicted RBP4.28□□□□□ -1.72
LDLR-209ENST00000558528 CALCRP30988 508 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 CFHR2P36980 270 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 CD200P41217 278 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 OR3A4PP47883 348 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 KCNJ3P48549 501 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 PTH2RP49190 550 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 VEGFCP49767 419 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 GPM6AP51674 278 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 TAS2R19P59542 299 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 GNG2P59768 71 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 QRFPP83859 136 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms