RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ZNF501Q96CX3 271 aaPredicted RBP9.74□□□□□ -0.85
LDLR-208ENST00000558518 FAM103A1Q9BTL3 118 aaKnown RBP9.74□□□□□ -0.85
LDLR-208ENST00000558518 FAM234AQ9H0X4 552 aa9.74□□□□□ -0.85
LDLR-208ENST00000558518 A0A0J9YW62 118 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 C5orf49A4QMS7 147 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 SLC22A20A6NK97 555 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 DVL1O14640 695 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 TP53I11O14683 189 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 CDS2O95674 445 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 VDAC1P21796 283 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 PAX5Q02548 391 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 TMEM241Q24JQ0 296 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 COL13A1Q5TAT6 717 aaPredicted RBP9.73□□□□□ -0.85
LDLR-208ENST00000558518 FAM90A2PQ658T7 463 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 Q6ZPA2 131 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 SLC35E3Q7Z769 313 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 PSMF1Q92530 271 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 SIRT7Q9NRC8 400 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 COL6A3P12111 3177 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 ZNF732B4DXR9 585 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 RBM11P57052 281 aaKnown RBP9.73□□□□□ -0.85
LDLR-208ENST00000558518 GNB2P62879 340 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 ARL16Q0P5N6 197 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 ZNF816Q0VGE8 651 aaPredicted RBP9.73□□□□□ -0.85
LDLR-208ENST00000558518 EIF3IQ13347 325 aaKnown RBP9.73□□□□□ -0.85
LDLR-208ENST00000558518 SLC10A1Q14973 349 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 BTNL3Q6UXE8 466 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 SPSB1Q96BD6 273 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 ADGRG7Q96K78 797 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 RARRES3Q9UL19 164 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 PTRH2Q9Y3E5 179 aaKnown RBP9.73□□□□□ -0.85
LDLR-208ENST00000558518 TRAPPC2LH3BP13 241 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 SIRPB1O00241 398 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 PDGFBP01127 241 aaPredicted RBP9.73□□□□□ -0.85
LDLR-208ENST00000558518 DTYMKP23919 212 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 PSG4Q00888 419 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 TCEAL6Q6IPX3 200 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 TOMM20LQ6UXN7 152 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 LHFPL2Q6ZUX7 228 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 SNIP1Q8TAD8 396 aaKnown RBP9.73□□□□□ -0.85
LDLR-208ENST00000558518 TUBG2Q9NRH3 451 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 CLEC1BQ9P126 229 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 OR1A1Q9P1Q5 309 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 PAM16Q9Y3D7 125 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 V9GYS6 101 aa9.73□□□□□ -0.85
LDLR-208ENST00000558518 DSPP15924 2871 aaKnown RBP9.72□□□□□ -0.85
LDLR-208ENST00000558518 IGHV1OR15-9A0A0B4J2B8 117 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 A0A0U1RQV5 110 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 A0A1B0GU03 582 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 FOXI3A8MTJ6 420 aaPredicted RBP9.72□□□□□ -0.85
LDLR-208ENST00000558518 RRP8O43159 456 aaKnown RBP9.72□□□□□ -0.85
LDLR-208ENST00000558518 PAGE4O60829 102 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 IFNA1P01562 189 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 IGHV3-13P01766 116 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 IGHV3-7P01780 117 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 MBP02144 154 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 GZMHP20718 246 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 TMEM41BQ5BJD5 291 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 Q6ZRM9 215 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 MRPL21Q7Z2W9 205 aaKnown RBP9.72□□□□□ -0.85
LDLR-208ENST00000558518 OR51G1Q8NGK1 321 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 OR10J5Q8NHC4 309 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 ABHD3Q8WU67 409 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 OR4C12Q96R67 309 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 SRXN1Q9BYN0 137 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 OR51I2Q9H344 312 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 CADP27708 2225 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 SYNGR1O43759 233 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 CCL1P22362 96 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 MDH2P40926 338 aaKnown RBP9.72□□□□□ -0.85
LDLR-208ENST00000558518 TCF23Q7RTU1 214 aa9.72□□□□□ -0.85
LDLR-208ENST00000558518 TRAV34A0A0B4J273 112 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 C1QTNF9BB2RNN3 333 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 C2CD4DB7Z1M9 353 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 OPN1MWP04001 364 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 OPN1MW2P0DN77 364 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 OPN1MW3P0DN78 364 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 SELEP16581 610 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 TMEM183AQ8IXX5 376 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 SDF2L1Q9HCN8 221 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 CLEC18AA5D8T8 446 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 THBS3P49746 956 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 CCR5P51681 352 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 SRPXP78539 464 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 WIPI1Q5MNZ9 446 aaPredicted RBP9.71□□□□□ -0.85
LDLR-208ENST00000558518 GUSBP11Q6P575 273 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 CLEC18CQ8NCF0 446 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 MRPL30Q8TCC3 161 aaKnown RBP9.71□□□□□ -0.85
LDLR-208ENST00000558518 YPEL4Q96NS1 127 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 ANGPTL4Q9BY76 406 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 CRIM1Q9NZV1 1036 aa9.71□□□□□ -0.85
LDLR-208ENST00000558518 SYNGR2O43760 224 aa9.71□□□□□ -0.86
LDLR-208ENST00000558518 PGLYRP1O75594 196 aaPredicted RBP9.71□□□□□ -0.86
LDLR-208ENST00000558518 PIAS2O75928 621 aa9.71□□□□□ -0.86
LDLR-208ENST00000558518 SERPINA7P05543 415 aa9.71□□□□□ -0.86
LDLR-208ENST00000558518 CD27P26842 260 aa9.71□□□□□ -0.86
LDLR-208ENST00000558518 PSMB3P49720 205 aa9.71□□□□□ -0.86
LDLR-208ENST00000558518 HOXA4Q00056 320 aaPredicted RBP9.71□□□□□ -0.86
LDLR-208ENST00000558518 ZNF726P1Q15940 193 aa9.71□□□□□ -0.86
LDLR-208ENST00000558518 MKXQ8IYA7 352 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms