RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 PDK2Q15119 407 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 CEACAM16Q2WEN9 425 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 FAM19A3Q7Z5A8 133 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 KATNAL2Q8IYT4 538 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 FAM19A2Q8N3H0 131 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 C15orf53Q8NAA6 179 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 PROKR2Q8NFJ6 384 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 OR51Q1Q8NH59 317 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 DOK4Q8TEW6 326 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 TSEN15Q8WW01 171 aaKnown RBP0.09□□□□□ -2.4
VPS13C-205ENST00000558088 FAAP24Q9BTP7 215 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 ADAT1Q9BUB4 502 aaKnown RBP0.09□□□□□ -2.4
VPS13C-205ENST00000558088 MND1Q9BWT6 205 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 NXF2Q9GZY0 626 aaKnown RBP0.09□□□□□ -2.4
VPS13C-205ENST00000558088 METTL17Q9H7H0 456 aaPredicted RBP0.09□□□□□ -2.4
VPS13C-205ENST00000558088 SCML1Q9UN30 329 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 FIS1Q9Y3D6 152 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 NOS1P29475 1434 aa0.09□□□□□ -2.4
VPS13C-205ENST00000558088 SBNO1A3KN83 1393 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 SIGLEC1Q9BZZ2 1709 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 CEP170Q5SW79 1584 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 A0A1B0GXF2 115 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 ZNF593O00488 134 aaPredicted RBP0.08□□□□□ -2.4
VPS13C-205ENST00000558088 DENRO43583 198 aaKnown RBP0.08□□□□□ -2.4
VPS13C-205ENST00000558088 SCN2BO60939 215 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 CDK14O94921 469 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 NPPAP01160 153 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 C1QCP02747 245 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 IGKV5-2P06315 115 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 FGF4P08620 206 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 FBP1P09467 338 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 RHOAP61586 193 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 HBG1P69891 147 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 HBG2P69892 147 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 DYNC1I2Q13409 638 aaKnown RBP0.08□□□□□ -2.4
VPS13C-205ENST00000558088 TAL2Q16559 108 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 EBLN2Q6P2I7 272 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 DGAT2L6Q6ZPD8 337 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 ZBTB8OSQ8IWT0 167 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 CA13Q8N1Q1 262 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 GAPTQ8N292 157 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 ARL6IP6Q8N6S5 226 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 LFNGQ8NES3 379 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 OR8G5Q8NG78 346 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 SUN5Q8TC36 379 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 NAT6Q93015 286 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 CENPNQ96H22 339 aaPredicted RBP0.08□□□□□ -2.4
VPS13C-205ENST00000558088 MIEN1Q9BRT3 115 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 UTP23Q9BRU9 249 aaKnown RBP0.08□□□□□ -2.4
VPS13C-205ENST00000558088 ZNF426Q9BUY5 554 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 CHST5Q9GZS9 411 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 C16orf95Q9H693 158 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 C8orf33Q9H7E9 229 aaPredicted RBP0.08□□□□□ -2.4
VPS13C-205ENST00000558088 ACOT13Q9NPJ3 140 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 CHRAC1Q9NRG0 131 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 RAB20Q9NX57 234 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 IFNKQ9P0W0 207 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 SNX12Q9UMY4 172 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 TBL2Q9Y4P3 447 aaKnown RBP0.08□□□□□ -2.4
VPS13C-205ENST00000558088 SNURFQ9Y675 71 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 MYOFQ9NZM1 2061 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 COL18A1P39060 1754 aa0.08□□□□□ -2.4
VPS13C-205ENST00000558088 ARHGAP32A7KAX9 2087 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 FREM1Q5H8C1 2179 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 SYNJ2BP-COX16A0A087WUM0 186 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 TMEM235A6NFC5 223 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 I3L4J1 428 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 SOX14O95416 240 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 LTAP01374 205 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 BPGMP07738 259 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 CTSEP14091 401 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 CCR2P41597 374 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 REG1BP48304 166 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 SERPINB10P48595 397 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 TTPAP49638 278 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 IDH3GP51553 393 aaPredicted RBP0.07□□□□□ -2.4
VPS13C-205ENST00000558088 BCAP31P51572 246 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 CTBP2P56545 445 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 IL18Q14116 193 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 PDGFRLQ15198 375 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 LRRC75BQ2VPJ9 315 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 MRPL51Q4U2R6 128 aaKnown RBP0.07□□□□□ -2.4
VPS13C-205ENST00000558088 PABPC1L2AQ5JQF8 200 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 RESP18Q5W5W9 173 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 LHFPL1Q86WI0 220 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 IQCGQ9H095 443 aaKnown RBP0.07□□□□□ -2.4
VPS13C-205ENST00000558088 OR2AG1Q9H205 316 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 AUNIPQ9H7T9 357 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 KPTNQ9Y664 436 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 ZNF532Q9HCE3 1301 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 POLEQ07864 2286 aa0.07□□□□□ -2.4
VPS13C-205ENST00000558088 ATAD2BQ9ULI0 1458 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 TRAV8-2A0A0B4J237 113 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 TRAV25A0A0B4J276 109 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 F8W036 122 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 TXNDC9O14530 226 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 UBE2L6O14933 153 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 FGF16O43320 207 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 MRPS14O60783 128 aaKnown RBP0.06□□□□□ -2.4
VPS13C-205ENST00000558088 PDCD6O75340 191 aa0.06□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms