RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 A0A087WWC5 75 aa11.47□□□□□ -0.57
SHMT2-222ENST00000555774 CDRT15L2A8MXV6 281 aa11.47□□□□□ -0.57
SHMT2-222ENST00000555774 EIF3GO75821 320 aaKnown RBP eCLIP11.47□□□□□ -0.57
SHMT2-222ENST00000555774 IL18BPO95998 194 aa11.47□□□□□ -0.57
SHMT2-222ENST00000555774 ZNF14P17017 642 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-222ENST00000555774 CCL20P78556 96 aa11.47□□□□□ -0.57
SHMT2-222ENST00000555774 OR10G4Q8NGN3 311 aa11.47□□□□□ -0.57
SHMT2-222ENST00000555774 TCEAL3Q969E4 200 aa11.47□□□□□ -0.57
SHMT2-222ENST00000555774 FER1L6-AS2Q96M78 137 aa11.47□□□□□ -0.57
SHMT2-222ENST00000555774 GUCD1Q96NT3 240 aa11.47□□□□□ -0.57
SHMT2-222ENST00000555774 GPHA2Q96T91 129 aa11.47□□□□□ -0.57
SHMT2-222ENST00000555774 ABHD14AQ9BUJ0 271 aa11.47□□□□□ -0.57
SHMT2-222ENST00000555774 PRSS50Q9UI38 385 aa11.47□□□□□ -0.57
SHMT2-222ENST00000555774 RNF150Q9ULK6 438 aa11.47□□□□□ -0.57
SHMT2-222ENST00000555774 A0A1B0GV50 99 aa11.46□□□□□ -0.57
SHMT2-222ENST00000555774 MED19A0JLT2 244 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-222ENST00000555774 SCAF4O95104 1147 aaKnown RBP11.46□□□□□ -0.57
SHMT2-222ENST00000555774 PSG2P11465 335 aa11.46□□□□□ -0.57
SHMT2-222ENST00000555774 EPHA1P21709 976 aa11.46□□□□□ -0.57
SHMT2-222ENST00000555774 CTAG1AP78358 180 aa11.46□□□□□ -0.57
SHMT2-222ENST00000555774 SLC10A1Q14973 349 aa11.46□□□□□ -0.57
SHMT2-222ENST00000555774 TBC1D28Q2M2D7 210 aa11.46□□□□□ -0.57
SHMT2-222ENST00000555774 TMEM217Q8N7C4 229 aa11.46□□□□□ -0.57
SHMT2-222ENST00000555774 ISOC2Q96AB3 205 aa11.46□□□□□ -0.57
SHMT2-222ENST00000555774 YPEL4Q96NS1 127 aa11.46□□□□□ -0.57
SHMT2-222ENST00000555774 LIN7CQ9NUP9 197 aaKnown RBP11.46□□□□□ -0.57
SHMT2-222ENST00000555774 A0A0G2JRQ6 117 aa11.46□□□□□ -0.58
SHMT2-222ENST00000555774 A0A1W2PPE2 198 aa11.46□□□□□ -0.58
SHMT2-222ENST00000555774 ZNHIT1O43257 154 aa11.46□□□□□ -0.58
SHMT2-222ENST00000555774 LILRA1O75019 489 aa11.46□□□□□ -0.58
SHMT2-222ENST00000555774 OR8U8P0C7N1 319 aa11.46□□□□□ -0.58
SHMT2-222ENST00000555774 DAOP14920 347 aa11.46□□□□□ -0.58
SHMT2-222ENST00000555774 CA6P23280 308 aa11.46□□□□□ -0.58
SHMT2-222ENST00000555774 RPS23P62266 143 aaKnown RBP11.46□□□□□ -0.58
SHMT2-222ENST00000555774 MRPL49Q13405 166 aaKnown RBP11.46□□□□□ -0.58
SHMT2-222ENST00000555774 ICAM4Q14773 271 aa11.46□□□□□ -0.58
SHMT2-222ENST00000555774 LPAL2Q16609 132 aa11.46□□□□□ -0.58
SHMT2-222ENST00000555774 ACSF3Q4G176 576 aaPredicted RBP11.46□□□□□ -0.58
SHMT2-222ENST00000555774 KHDC3LQ587J8 217 aa11.46□□□□□ -0.58
SHMT2-222ENST00000555774 OR2T2Q6IF00 324 aa11.46□□□□□ -0.58
SHMT2-222ENST00000555774 ZNF497Q6ZNH5 498 aa11.46□□□□□ -0.58
SHMT2-222ENST00000555774 MDP1Q86V88 176 aa11.46□□□□□ -0.58
SHMT2-222ENST00000555774 RNASE11Q8TAA1 199 aaKnown RBP11.46□□□□□ -0.58
SHMT2-222ENST00000555774 PUS1Q9Y606 427 aaKnown RBP eCLIP11.46□□□□□ -0.58
SHMT2-222ENST00000555774 A0A1W2PNU3 283 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-222ENST00000555774 OR2C1O95371 312 aa11.45□□□□□ -0.58
SHMT2-222ENST00000555774 IFNA17P01571 189 aa11.45□□□□□ -0.58
SHMT2-222ENST00000555774 ACAA1P09110 424 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-222ENST00000555774 CD46P15529 392 aa11.45□□□□□ -0.58
SHMT2-222ENST00000555774 ERVK11-1P61568 191 aa11.45□□□□□ -0.58
SHMT2-222ENST00000555774 C17orf78Q8N4C9 275 aa11.45□□□□□ -0.58
SHMT2-222ENST00000555774 FAM24BQ8N5W8 94 aa11.45□□□□□ -0.58
SHMT2-222ENST00000555774 OR51H1Q8NH63 302 aa11.45□□□□□ -0.58
SHMT2-222ENST00000555774 CLDND2Q8NHS1 167 aa11.45□□□□□ -0.58
SHMT2-222ENST00000555774 PSMG3Q9BT73 122 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-222ENST00000555774 ARRDC1-AS1Q9H2J1 176 aa11.45□□□□□ -0.58
SHMT2-222ENST00000555774 H3BQ15 152 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 RHBDL1O75783 438 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 MT-CO3P00414 261 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 S100A9P06702 114 aaKnown RBP11.44□□□□□ -0.58
SHMT2-222ENST00000555774 TESK1Q15569 626 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 ZNF295-AS1Q8N0V1 137 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 PARD6GQ9BYG4 376 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-222ENST00000555774 WIPI2Q9Y4P8 454 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 LIPGQ9Y5X9 500 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 RFNGQ9Y644 331 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 hCG_1809904A0A1W2PP81 198 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 A0A1W2PR64 198 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 A0A1W2PRV1 198 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 RNF212BA8MTL3 300 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 SLC33A1O00400 549 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-222ENST00000555774 SYNGR2O43760 224 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 IGLV2-14P01704 120 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 IGHV2-5P01817 119 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 ARG1P05089 322 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 RUNX1Q01196 453 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 GABRA6Q16445 453 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 C3AR1Q16581 482 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 SLC25A24Q6NUK1 477 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 SLC35E3Q7Z769 313 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 MUCL1Q96DR8 90 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 WDYHV1Q96HA8 205 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 C12orf49Q9H741 205 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 SIRT7Q9NRC8 400 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 MBNL3Q9NUK0 354 aaKnown RBP11.44□□□□□ -0.58
SHMT2-222ENST00000555774 OR1A1Q9P1Q5 309 aa11.44□□□□□ -0.58
SHMT2-222ENST00000555774 CXorf65A6NEN9 183 aa11.43□□□□□ -0.58
SHMT2-222ENST00000555774 FAM90A26D6RGX4 464 aa11.43□□□□□ -0.58
SHMT2-222ENST00000555774 OR2H2O95918 312 aa11.43□□□□□ -0.58
SHMT2-222ENST00000555774 ZNF146Q15072 292 aa11.43□□□□□ -0.58
SHMT2-222ENST00000555774 HAGHQ16775 308 aa11.43□□□□□ -0.58
SHMT2-222ENST00000555774 HEPN1Q6WQI6 88 aa11.43□□□□□ -0.58
SHMT2-222ENST00000555774 SCGB1C1Q8TD33 95 aa11.43□□□□□ -0.58
SHMT2-222ENST00000555774 IL1F10Q8WWZ1 152 aa11.43□□□□□ -0.58
SHMT2-222ENST00000555774 TVP23CQ96ET8 276 aa11.43□□□□□ -0.58
SHMT2-222ENST00000555774 SEBOXQ9HB31 216 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-222ENST00000555774 CACNG5Q9UF02 275 aa11.43□□□□□ -0.58
SHMT2-222ENST00000555774 TRAPPC2LQ9UL33 140 aa11.43□□□□□ -0.58
SHMT2-222ENST00000555774 COLQQ9Y215 455 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-222ENST00000555774 LOC102723971A0A1B0GUV8 181 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms