RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 C10orf91Q5T1B1 145 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 PDPK2PQ6A1A2 396 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 EBLN2Q6P2I7 272 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 C2orf73Q8N5S3 287 aaPredicted RBP1.99□□□□□ -2.09
VPS29-205ENST00000548539 Q8NAQ8 132 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 OR7G1Q8NGA0 311 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 HIST1H2BAQ96A08 127 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 BCL2L14Q9BZR8 327 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 MCTS1Q9ULC4 181 aaKnown RBP1.99□□□□□ -2.09
VPS29-205ENST00000548539 MYO15BQ96JP2 1530 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 VWA8A3KMH1 1905 aa1.99□□□□□ -2.09
VPS29-205ENST00000548539 TMEM94Q12767 1356 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 IGKV1-12A0A0C4DH73 117 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 PHYHO14832 338 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 LIN7AO14910 233 aaPredicted RBP1.98□□□□□ -2.09
VPS29-205ENST00000548539 LECT2O14960 151 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 IGKV1D-12P01611 117 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 UBE2G2P60604 165 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 FAM3AP98173 230 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 HENMT1Q5T8I9 393 aaKnown RBP1.98□□□□□ -2.09
VPS29-205ENST00000548539 NOXRED1Q6NXP6 359 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 MTERF4Q7Z6M4 381 aaKnown RBP1.98□□□□□ -2.09
VPS29-205ENST00000548539 SLC13A5Q86YT5 568 aaPredicted RBP1.98□□□□□ -2.09
VPS29-205ENST00000548539 SUN5Q8TC36 379 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 LMX1AQ8TE12 382 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 ZNF514Q96K75 400 aaPredicted RBP1.98□□□□□ -2.09
VPS29-205ENST00000548539 GPR22Q99680 433 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 C7orf50Q9BRJ6 194 aaKnown RBP1.98□□□□□ -2.09
VPS29-205ENST00000548539 ZNF286AQ9HBT8 521 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 EURLQ9NYK6 297 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 CARHSP1Q9Y2V2 147 aaKnown RBP1.98□□□□□ -2.09
VPS29-205ENST00000548539 LINC00588Q9Y4M8 146 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 OR51B4Q9Y5P0 310 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 PTPRKQ15262 1439 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 SPATA31E1Q6ZUB1 1445 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 SHANK1Q9Y566 2161 aa1.98□□□□□ -2.09
VPS29-205ENST00000548539 DYSFO75923 2080 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 IGLV10-54A0A075B6I4 117 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 A0A1B0GU33 70 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 FABP12A6NFH5 140 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 E7EQL1 145 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 GOLGA8RI6L899 631 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 TOX3O15405 576 aaPredicted RBP1.97□□□□□ -2.09
VPS29-205ENST00000548539 SYNGR1O43759 233 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 PSKH1P11801 424 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 CTSEP14091 401 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 ZNF22P17026 224 aaPredicted RBP1.97□□□□□ -2.09
VPS29-205ENST00000548539 GADD45AP24522 165 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 PSMB6P28072 239 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 CRATP43155 626 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 GTF2BQ00403 316 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 CLEC6AQ6EIG7 209 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 FAM45BPQ6NSW5 357 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 SCXQ7RTU7 201 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 VN1R4Q7Z5H5 301 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 NIT1Q86X76 327 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 FUNDC1Q8IVP5 155 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 ZBTB8OSQ8IWT0 167 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 YIPF7Q8N8F6 280 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 LFNGQ8NES3 379 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 OR8B2Q96RD0 313 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 EBNA1BP2Q99848 306 aaKnown RBP1.97□□□□□ -2.09
VPS29-205ENST00000548539 TMEM208Q9BTX3 173 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 HIGD2AQ9BW72 106 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 UGT2B28Q9BY64 529 aa1.97□□□□□ -2.09
VPS29-205ENST00000548539 TMEM213A2RRL7 107 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 SDHAF1A6NFY7 115 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 F5H5T6 163 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 KLRC4-KLRK1H3BQV0 150 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 PSCAO43653 123 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 SLC25A20O43772 301 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 CTSGP08311 255 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 ORM2P19652 201 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 F8A1P23610 371 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 CRABP1P29762 137 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 PPP1CCP36873 323 aaKnown RBP1.96□□□□□ -2.1
VPS29-205ENST00000548539 CLDN12P56749 244 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 BSPH1Q075Z2 132 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 C1DQ13901 141 aaKnown RBP1.96□□□□□ -2.1
VPS29-205ENST00000548539 DNAL1Q4LDG9 190 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 TRMT12Q53H54 448 aaKnown RBP1.96□□□□□ -2.1
VPS29-205ENST00000548539 HCP5Q6MZN7 132 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 SPATA24Q86W54 205 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 MFSD8Q8NHS3 518 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 TAMM41Q96BW9 452 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 GALMQ96C23 342 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 DCUN1D5Q9BTE7 237 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 WASHC3Q9Y3C0 194 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 ARAP3Q8WWN8 1544 aa1.96□□□□□ -2.1
VPS29-205ENST00000548539 CRB1P82279 1406 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 IGHV3OR15-7A0A075B7D8 119 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 A0A1W2PNM2 257 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 DAPL1A0PJW8 107 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 METTL15A6NJ78 407 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 SLC31A1O15431 190 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 ARL6IP5O75915 188 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 SOX14O95416 240 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 ORM1P02763 201 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 OPN1SWP03999 348 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 LGALS3P17931 250 aaKnown RBP1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms