RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 PCSK4Q6UW60 755 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 SSX7Q7RTT5 188 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 CDX2Q99626 313 aaPredicted RBP12.81□□□□□ -0.36
USP28-214ENST00000545540 KIAA1324LA8MWY0 1029 aaPredicted RBP12.81□□□□□ -0.36
USP28-214ENST00000545540 LHX2P50458 406 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 ZNF266Q14584 549 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 CEACAM21Q3KPI0 293 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 NMSQ5H8A3 153 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 TPRX1Q8N7U7 411 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 OR10J5Q8NHC4 309 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 RNF122Q9H9V4 155 aa12.81□□□□□ -0.36
USP28-214ENST00000545540 GRPP07492 148 aa12.8□□□□□ -0.36
USP28-214ENST00000545540 OR1C1Q15619 314 aa12.8□□□□□ -0.36
USP28-214ENST00000545540 SPANXN5Q5MJ07 72 aa12.8□□□□□ -0.36
USP28-214ENST00000545540 ABHD17BQ5VST6 288 aa12.8□□□□□ -0.36
USP28-214ENST00000545540 OR8G2PQ6IF36 304 aa12.8□□□□□ -0.36
USP28-214ENST00000545540 MRPL30Q8TCC3 161 aaKnown RBP12.8□□□□□ -0.36
USP28-214ENST00000545540 Q8WTZ3 238 aa12.8□□□□□ -0.36
USP28-214ENST00000545540 FZR1Q9UM11 496 aa12.8□□□□□ -0.36
USP28-214ENST00000545540 WSB1Q9Y6I7 421 aa12.8□□□□□ -0.36
USP28-214ENST00000545540 A0A1W2PNU3 283 aaPredicted RBP12.8□□□□□ -0.36
USP28-214ENST00000545540 MMP9P14780 707 aa12.8□□□□□ -0.36
USP28-214ENST00000545540 VDAC1P21796 283 aa12.8□□□□□ -0.36
USP28-214ENST00000545540 UCP3P55916 312 aa12.8□□□□□ -0.36
USP28-214ENST00000545540 KRTAP27-1Q3LI81 207 aa12.8□□□□□ -0.36
USP28-214ENST00000545540 ZNF808Q8N4W9 903 aaPredicted RBP12.8□□□□□ -0.36
USP28-214ENST00000545540 POLEQ07864 2286 aa12.8□□□□□ -0.36
USP28-214ENST00000545540 MT-CO3P00414 261 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 IGHV3-13P01766 116 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 IGHV3-7P01780 117 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 CLDN18P56856 261 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 B2MP61769 119 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 ICAM4Q14773 271 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 RIPPLY2Q5TAB7 128 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 ZNF295-AS1Q8N0V1 137 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 APH1AQ96BI3 265 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 TMEM56Q96MV1 263 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 TTTY12Q9BZ98 90 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 TMPRSS5Q9H3S3 457 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 RPRMQ9NS64 109 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 TMEM56-RWDD3S4R434 201 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 RIF1Q5UIP0 2472 aaKnown RBP12.79□□□□□ -0.36
USP28-214ENST00000545540 CDIPTO14735 213 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 IFNA4P05014 189 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 CD55P08174 381 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 TMEM251Q8N6I4 163 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 EGLN1Q9GZT9 426 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 C11orf1Q9H5F2 150 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 STRAPQ9Y3F4 350 aaKnown RBP12.79□□□□□ -0.36
USP28-214ENST00000545540 ATP23Q9Y6H3 246 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 CYB5BO43169 146 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 IGKV1-39P01597 117 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 IGKV1D-39P04432 117 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 SRP19P09132 144 aaKnown RBP12.79□□□□□ -0.36
USP28-214ENST00000545540 F2RP25116 425 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 ID3Q02535 119 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 EIF3IQ13347 325 aaKnown RBP12.79□□□□□ -0.36
USP28-214ENST00000545540 LTC4SQ16873 150 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 MCEMP1Q8IX19 187 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 PRDM14Q9GZV8 571 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 ZNF703Q9H7S9 590 aaPredicted RBP12.79□□□□□ -0.36
USP28-214ENST00000545540 DLL3Q9NYJ7 618 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 IL36GQ9NZH8 169 aa12.79□□□□□ -0.36
USP28-214ENST00000545540 C9orf172C9J069 976 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 SYNGR4O95473 234 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 SERPINA7P05543 415 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 PMP22Q01453 160 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 SPNS3Q6ZMD2 512 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 ZNF826PQ6ZT77 177 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 SPSB4Q96A44 273 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 SSX3Q99909 188 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 TRAPPC2LQ9UL33 140 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 PCNX2A6NKB5 2137 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 DEGS1O15121 323 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 PITX3O75364 302 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 SCAF4O95104 1147 aaKnown RBP12.78□□□□□ -0.36
USP28-214ENST00000545540 COL8A2P25067 703 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 ZNF880Q6PDB4 577 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 COLCA1Q6ZS62 124 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 FAM58AQ8N1B3 248 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 NECAP1Q8NC96 275 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 SLC25A31Q9H0C2 315 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 ARRDC1-AS1Q9H2J1 176 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 PLK3Q9H4B4 646 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 BOKQ9UMX3 212 aaPredicted RBP12.78□□□□□ -0.36
USP28-214ENST00000545540 UBE2CO00762 179 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 C9orf152Q5JTZ5 239 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 OR5T1Q8NG75 326 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 APOBEC3DQ96AK3 386 aaPredicted RBP12.78□□□□□ -0.36
USP28-214ENST00000545540 HEATR1Q9H583 2144 aaKnown RBP12.78□□□□□ -0.36
USP28-214ENST00000545540 RNF115Q9Y4L5 304 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 PIEZO2Q9H5I5 2752 aa12.78□□□□□ -0.36
USP28-214ENST00000545540 ANKRD30BLA7E2S9 258 aa12.77□□□□□ -0.36
USP28-214ENST00000545540 KRASP01116 189 aa12.77□□□□□ -0.36
USP28-214ENST00000545540 TRGC2P03986 189 aa12.77□□□□□ -0.36
USP28-214ENST00000545540 UCP1P25874 307 aa12.77□□□□□ -0.36
USP28-214ENST00000545540 IDH3GP51553 393 aaPredicted RBP12.77□□□□□ -0.36
USP28-214ENST00000545540 UCP2P55851 309 aa12.77□□□□□ -0.36
USP28-214ENST00000545540 PLP2Q04941 152 aa12.77□□□□□ -0.36
USP28-214ENST00000545540 HMGN3Q15651 99 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms