RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SMDT1Q9H4I9 107 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 ZNF629Q9UEG4 869 aaPredicted RBP8.38□□□□□ -1.07
SS18-205ENST00000542420 DMRT1Q9Y5R6 373 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 IGKV1-6A0A0C4DH72 117 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 A0A1B0GU03 582 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 RNF212BA8MTL3 300 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 IFNL4K9M1U5 179 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 SLC33A1O00400 549 aaPredicted RBP8.37□□□□□ -1.07
SS18-205ENST00000542420 F2RP25116 425 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 ID3Q02535 119 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 SP6Q3SY56 376 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 C9orf152Q5JTZ5 239 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 TRAT1Q6PIZ9 186 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 ZNF818PQ6ZRF7 136 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 FAM90A1Q86YD7 464 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 ZADH2Q8N4Q0 377 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 OR11L1Q8NGX0 322 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 SLC25A40Q8TBP6 338 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 TSNAXQ99598 290 aaKnown RBP8.37□□□□□ -1.07
SS18-205ENST00000542420 HIPK2Q9H2X6 1198 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 PLEKHF2Q9H8W4 249 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 A0A1B0GW64 132 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 DANCRP0C864 163 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 SLC35E4Q6ICL7 350 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 WDR31Q8NA23 367 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 NAXEQ8NCW5 288 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 LFNGQ8NES3 379 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 OR10V1Q8NGI7 309 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 OR1J1Q8NGS3 322 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 SECTM1Q8WVN6 248 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 OR2J1Q9GZK6 312 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 EGLN1Q9GZT9 426 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 LYRM2Q9NU23 88 aaPredicted RBP8.37□□□□□ -1.07
SS18-205ENST00000542420 TAAR3PQ9P1P4 343 aa8.37□□□□□ -1.07
SS18-205ENST00000542420 RCL1Q9Y2P8 373 aaKnown RBP8.37□□□□□ -1.07
SS18-205ENST00000542420 COLCA2A8K830 154 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 UMAD1C9J7I0 102 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 FBXO24O75426 580 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 PGLYRP1O75594 196 aaPredicted RBP8.36□□□□□ -1.07
SS18-205ENST00000542420 CEACAM1P13688 526 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 ZNF44P15621 663 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 NPBWR1P48145 328 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 IDH3GP51553 393 aaPredicted RBP8.36□□□□□ -1.07
SS18-205ENST00000542420 RNF212Q495C1 297 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 WDR86Q86TI4 376 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 VASH2Q86V25 355 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 STX12Q86Y82 276 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 OR2C3Q8N628 320 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 ARL6IP6Q8N6S5 226 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 OR52M1Q8NGK5 317 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 HS3ST6Q96QI5 342 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 OR2S2Q9NQN1 319 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 LIN7CQ9NUP9 197 aaKnown RBP8.36□□□□□ -1.07
SS18-205ENST00000542420 LUZP4Q9P127 313 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 SPAARA0A1B0GVQ0 90 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 A0A1W2PPE3 182 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 LILRA1O75019 489 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 MED6O75586 246 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 PTBP3O95758 552 aaKnown RBP8.36□□□□□ -1.07
SS18-205ENST00000542420 OR2H2O95918 312 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 SCGB1D2O95969 90 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 CD5P06127 495 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 PSG7Q13046 419 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 ZNF154Q13106 437 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 PDCD1Q15116 288 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 DPPA3Q6W0C5 159 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 KLF14Q8TD94 323 aaPredicted RBP8.36□□□□□ -1.07
SS18-205ENST00000542420 UFSP2Q9NUQ7 469 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 IL36RNQ9UBH0 155 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 METTL1Q9UBP6 276 aaKnown RBP8.36□□□□□ -1.07
SS18-205ENST00000542420 PROCRQ9UNN8 238 aa8.36□□□□□ -1.07
SS18-205ENST00000542420 GPR179Q6PRD1 2367 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 CHD3Q12873 2000 aaKnown RBP8.35□□□□□ -1.07
SS18-205ENST00000542420 IGKV1D-13A0A0B4J2D9 117 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 TMEM30CPA0ZSE6 113 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 NKX2-6A6NCS4 301 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 BTBD17A6NE02 478 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 FAM90A26D6RGX4 464 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 PPIHO43447 177 aaKnown RBP8.35□□□□□ -1.07
SS18-205ENST00000542420 WDR1O75083 606 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 CGAP01215 116 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 IGHV2-5P01817 119 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 IGKV1-13P0DP09 117 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 DVL1P1P54792 670 aaPredicted RBP8.35□□□□□ -1.07
SS18-205ENST00000542420 TAS2R30P59541 319 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 PMP22Q01453 160 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 EWSR1Q01844 656 aaKnown RBP eCLIP8.35□□□□□ -1.07
SS18-205ENST00000542420 ZNF718Q3SXZ3 478 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 FAM219AQ8IW50 185 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 C9orf106Q8NAJ2 232 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 C14orf144Q96I85 54 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 RAB40CQ96S21 281 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 TCEAL7Q9BRU2 100 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 CCL28Q9NRJ3 127 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 UQCC1Q9NVA1 299 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 ZDHHC8Q9ULC8 765 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 HSPA12AO43301 675 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 KCNAB3O43448 404 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 RHBDL1O75783 438 aa8.35□□□□□ -1.07
SS18-205ENST00000542420 SCAF4O95104 1147 aaKnown RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms