RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 TESK1Q15569 626 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 TGIF2LYQ8IUE0 185 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 SPERTQ8NA61 448 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 OR8U1Q8NH10 309 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 RFESDQ8TAC1 157 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 TMEM222Q9H0R3 208 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 TUBG2Q9NRH3 451 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 RNF150Q9ULK6 438 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 KCNS2Q9ULS6 477 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 ZNF835Q9Y2P0 537 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 DYSFO75923 2080 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 PGLYRP1O75594 196 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-216ENST00000541410 LTC4SQ16873 150 aa12.19□□□□□ -0.46
CLIP1-216ENST00000541410 SMIM21Q3B7S5 101 aa12.19□□□□□ -0.46
CLIP1-216ENST00000541410 ZNF695Q8IW36 515 aa12.19□□□□□ -0.46
CLIP1-216ENST00000541410 PLPPR2Q96GM1 343 aa12.19□□□□□ -0.46
CLIP1-216ENST00000541410 CABLES2Q9BTV7 478 aa12.19□□□□□ -0.46
CLIP1-216ENST00000541410 SMIM3Q9BZL3 60 aa12.19□□□□□ -0.46
CLIP1-216ENST00000541410 DNAJB11Q9UBS4 358 aa12.19□□□□□ -0.46
CLIP1-216ENST00000541410 GLS2Q9UI32 602 aa12.19□□□□□ -0.46
CLIP1-216ENST00000541410 IGHV3-43A0A0B4J1X8 118 aa12.19□□□□□ -0.46
CLIP1-216ENST00000541410 IGHV3-43DP0DP04 118 aa12.19□□□□□ -0.46
CLIP1-216ENST00000541410 ZNF16P17020 682 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-216ENST00000541410 SSTR5P35346 364 aa12.19□□□□□ -0.46
CLIP1-216ENST00000541410 UBA52P62987 128 aaKnown RBP12.19□□□□□ -0.46
CLIP1-216ENST00000541410 GNMTQ14749 295 aa12.19□□□□□ -0.46
CLIP1-216ENST00000541410 ESCO2Q56NI9 601 aa12.19□□□□□ -0.46
CLIP1-216ENST00000541410 GCSAMQ8N6F7 178 aa12.19□□□□□ -0.46
CLIP1-216ENST00000541410 OR52L2PQ8NGH6 319 aa12.19□□□□□ -0.46
CLIP1-216ENST00000541410 OR10V1Q8NGI7 309 aa12.19□□□□□ -0.46
CLIP1-216ENST00000541410 LILRB1Q8NHL6 650 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-216ENST00000541410 TUBD1Q9UJT1 453 aa12.19□□□□□ -0.46
CLIP1-216ENST00000541410 TMEM30CPA0ZSE6 113 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 DPRXA6NFQ7 191 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 C1QTNF9BB2RNN3 333 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 C12orf77C9JDV5 145 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 THBDP07204 575 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 PSG2P11465 335 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 BSPH1Q075Z2 132 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 IZUMO4Q1ZYL8 232 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 KRBOX4Q5JUW0 171 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 ADAM5Q6NVV9 412 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 CMTM1Q8IZ96 169 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 ZNRF1Q8ND25 227 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 MEGF10Q96KG7 1140 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 SHARPINQ9H0F6 387 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 PIGMQ9H3S5 423 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 MBNL3Q9NUK0 354 aaKnown RBP12.18□□□□□ -0.46
CLIP1-216ENST00000541410 YLPM1P49750 1951 aaKnown RBP12.18□□□□□ -0.46
CLIP1-216ENST00000541410 RAI1Q7Z5J4 1906 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-216ENST00000541410 IGKV1D-17A0A075B6S4 117 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 DEFB108AA8MXU0 73 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 H7C1Q1 480 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 I3L521 148 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 DEDDO75618 318 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 IGLV2-14P01704 120 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 ACAA1P09110 424 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-216ENST00000541410 HKR1P10072 659 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 SELLP14151 372 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 LMO1P25800 156 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 PRDX2P32119 198 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 NUP62P37198 522 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-216ENST00000541410 SELENOHQ8IZQ5 122 aaKnown RBP12.18□□□□□ -0.46
CLIP1-216ENST00000541410 LRTM2Q8N967 370 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 OR13A1Q8NGR1 328 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 DNTTIP1Q9H147 329 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 CYTL1Q9NRR1 136 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 DCAF16Q9NXF7 216 aa12.18□□□□□ -0.46
CLIP1-216ENST00000541410 K7EPK0 472 aa12.17□□□□□ -0.46
CLIP1-216ENST00000541410 ADAM20O43506 726 aa12.17□□□□□ -0.46
CLIP1-216ENST00000541410 C1QTNF9P0C862 333 aa12.17□□□□□ -0.46
CLIP1-216ENST00000541410 PET100P0DJ07 73 aa12.17□□□□□ -0.46
CLIP1-216ENST00000541410 RRASP10301 218 aa12.17□□□□□ -0.46
CLIP1-216ENST00000541410 LYL1P12980 280 aa12.17□□□□□ -0.46
CLIP1-216ENST00000541410 FAM71E2Q8N5Q1 922 aa12.17□□□□□ -0.46
CLIP1-216ENST00000541410 DEFB108BQ8NET1 73 aa12.17□□□□□ -0.46
CLIP1-216ENST00000541410 BSCL2Q96G97 398 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-216ENST00000541410 MAGT1Q9H0U3 335 aa12.17□□□□□ -0.46
CLIP1-216ENST00000541410 KCNIP1Q9NZI2 227 aa12.17□□□□□ -0.46
CLIP1-216ENST00000541410 WIPI2Q9Y4P8 454 aa12.17□□□□□ -0.46
CLIP1-216ENST00000541410 IGLV3-9A0A075B6K5 115 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 A0A1B0GW55 424 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 IGHV3-7P01780 117 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 HBZP02008 142 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 DUX4L2P0CJ85 424 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 DUX4L3P0CJ86 424 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 DUX4L4P0CJ87 422 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 DUX4L5P0CJ88 424 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 DUX4L6P0CJ89 424 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 DUX4L7P0CJ90 424 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 EPHA1P21709 976 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 CD80P33681 288 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 CD200P41217 278 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 SMCO1Q147U7 214 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 HMGN3Q15651 99 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 TOR2AQ5JU69 321 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 SHEQ5VZ18 495 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 DUX4L9Q6RFH8 374 aaPredicted RBP12.16□□□□□ -0.46
CLIP1-216ENST00000541410 TMEM108Q6UXF1 575 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 MOB1BQ7L9L4 216 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms