RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 ZNF273Q14593 569 aa12.27□□□□□ -0.45
COLCA1-204ENST00000540738 GLDNQ6ZMI3 551 aaPredicted RBP12.27□□□□□ -0.45
COLCA1-204ENST00000540738 C14orf79Q96F83 325 aa12.27□□□□□ -0.45
COLCA1-204ENST00000540738 ZNF729A6NN14 1252 aaPredicted RBP12.26□□□□□ -0.45
COLCA1-204ENST00000540738 LALBAP00709 142 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 PF4V1P10720 104 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 TCTEX1D1Q8N7M0 179 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 ST6GALNAC3Q8NDV1 305 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 CLEC7AQ9BXN2 247 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 IGLV3-32A0A0A0MS00 114 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 NKX2-6A6NCS4 301 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 PTGDSP41222 190 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 CALHM1Q8IU99 346 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 GAPTQ8N292 157 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 SPTBP11277 2137 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 CHEK1O14757 476 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 SOX15O60248 233 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 OR13C7P0DN81 318 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 ID1P41134 155 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 REG1BP48304 166 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 GGNBP1Q5YKI7 109 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 TRAV8-7A0A075B6U6 113 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 LOC390937A0A1W2PQ73 354 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 HBZP02008 142 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 RPL7L1Q6DKI1 246 aaKnown RBP12.26□□□□□ -0.45
COLCA1-204ENST00000540738 BAP18Q8IXM2 172 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 MEGF10Q96KG7 1140 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 CCL28Q9NRJ3 127 aa12.26□□□□□ -0.45
COLCA1-204ENST00000540738 C20orf202A1L168 122 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 RPL27AP46776 148 aaKnown RBP12.25□□□□□ -0.45
COLCA1-204ENST00000540738 XAF1Q6GPH4 301 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 OR5B3Q8NH48 314 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 SH2D2AQ9NP31 389 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 CALYQ9NYX4 217 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 SEMA5BQ9P283 1151 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 RP1P56715 2156 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 IGHV2OR16-5A0A0B4J2B6 119 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 CTDSPLO15194 276 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 C1QBP02746 253 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 PTHLHP12272 177 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 RAG2P55895 527 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 MMD2Q8IY49 270 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 GVQW1Q8N7I0 195 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 MARC2Q969Z3 335 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 PGLYRP3Q96LB9 341 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 RLFQ13129 1914 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 K7ENP7 123 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 HPRT1P00492 218 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 RNFT1Q5M7Z0 435 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 LILRB1Q8NHL6 650 aaPredicted RBP12.25□□□□□ -0.45
COLCA1-204ENST00000540738 ST6GALNAC2Q9UJ37 374 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 ERVH48-1M5A8F1 160 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 DCTN6O00399 190 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 ZG16O60844 167 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 TGFAP01135 160 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 GNLYP22749 145 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 IGHV1-2P23083 117 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 LOXL3P58215 753 aa12.25□□□□□ -0.45
COLCA1-204ENST00000540738 PPP1R1AQ13522 171 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 ABLIM2Q6H8Q1 611 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 ZNF66Q6ZN08 573 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 SCMH1Q96GD3 660 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 DCTN5Q9BTE1 182 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 MRPL22Q9NWU5 206 aaKnown RBP12.24□□□□□ -0.45
COLCA1-204ENST00000540738 CACNA1IQ9P0X4 2223 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 GPR179Q6PRD1 2367 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 TRAV39A0A0B4J263 110 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 RAB19A4D1S5 217 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 EGR4Q05215 589 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 DHRS2Q13268 280 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 PLA2G2CQ5R387 149 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 NCCRP1Q6ZVX7 275 aaPredicted RBP12.24□□□□□ -0.45
COLCA1-204ENST00000540738 PRSS33Q8NF86 280 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 SSBP3Q9BWW4 388 aaPredicted RBP12.24□□□□□ -0.45
COLCA1-204ENST00000540738 SYNGR2O43760 224 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 ONECUT2O95948 504 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 FAM3AP98173 230 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 HIST2H3AQ71DI3 136 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 DTD1Q8TEA8 209 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 KPTNQ9Y664 436 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 ANKRD20A5PA0PJZ0 165 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 C9orf170A2RU37 121 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 TPRX1Q8N7U7 411 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 TMED6Q8WW62 240 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 WDR61Q9GZS3 305 aaKnown RBP12.24□□□□□ -0.45
COLCA1-204ENST00000540738 SIRT7Q9NRC8 400 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 HAX1O00165 279 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 SPP1P10451 314 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 ORM2P19652 201 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 BAK1Q16611 211 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 TOR2AQ5JU69 321 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 FFAR4Q5NUL3 377 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 C20orf204Q6ZNR8 217 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 ABHD12Q8N2K0 398 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 SLC25A22Q9H936 323 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 POMT1Q9Y6A1 747 aa12.24□□□□□ -0.45
COLCA1-204ENST00000540738 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.23□□□□□ -0.45
COLCA1-204ENST00000540738 KRBOX1C9JBD0 128 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 GCM2O75603 506 aaPredicted RBP12.23□□□□□ -0.45
COLCA1-204ENST00000540738 CTRB1P17538 263 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms